Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g83 ATGACAAAAATAATCAAATCAAATCACGATTACCTAATTCTATTTTCAGATGATGATCATCAAAATAATTTGATATCGCTGCCGCCGTTTCGGATCTTCCCGTATTGCTCGCCTTTTTCTTTCTGGTCATTTTCCCGGGCTATGAAGGATTCCAACGTTGACCTTTTCGATCCTCGTACGATTATGGACTCAGATTTATCACCGTCCGGCGTGGCCGGAGGATCAGTATCCGACTCCGACTTCGCATTTGCTTTCAACGACAGTAATTTCTCCGATCGACTTCTGAGGATTGAGATCATAGCCGATTTGCCGGAGAGTAAGGGCGACGGCGAGGGGTGTAACAGTATTGCTGATTGGGCACGGAATCGGAAGCGACGGAGGGAGGAGATAAAGAAGGAAAACGCTGTTGATGTTCACCATGAGGAGCAGATTTTAAACTGTAACATGCCGGATACAGAGGATGGTGTGGCCTATGAAAATCAAGACGAGGAAGCTGTGGCTATGATTGAGGAATCCCCTCCAGGTGTTGGAATGAATTTGAGCCAACATGGTGATGAAGCTGGCCATAGCTCTGATTCATCCTGGGGAATGGACTGTTCTACTGTTCTTAGAGTCAAGACTCTACACATTAGCTCTCCAATTTTAGCAGCTAAGAGTCCATTTTTTTATAAGCTGTTTTCAAATGGGATGCGAGAGTCAGAGCAGCGACATGTTACTCTTCGAATTCATGCATCTGAAGAAGCTGCCCTAATGGACCTCCTGAATTTTATGTATAGTAATACTTTGTCAACAACCACACCTACTGCATTGCTGGATGTGCTGATGGCTGCTGACAAATTTGAGGTTGCTTCATGCATGAGATACTGCAGCCGGATGCTGCGGAACTTGCCTATGACTTGTGAATCTGCCTTACTGTATTTGGATCTTCCTTCTAGTGTTTTAATGGCTGAAGCAGTTCAGCCACTGACAGATGCTGCAAAGCAGTTTCTTGCTGGACGCTACAAGGATGTAACCAAGTTTCAGGAAGAGGTCCTAAACTTGCCGCTGGCCGGAATTGAGGCAGTGCTGTCCAGTGATGATCTCCAGGTTGCTTCTGAGGATGCTGTTTATGATTTTGTACTGAAGTGGGCCCGGATCCATTACCCAAAACTAGAGGACCGACGAGAAATCCTAGGTTCCCGCCTTGGCCGCCTTATCCGTTTTCCATACATGACCTGCCGGAAGCTGAAGAAGGTTTTGACTTGCAATGACTTCGATACTGAACTTGCATCGAAGGTCGTGCTGGAGGCTCTCTTTTTTAAGGCTGAGGCACCATACAGGCAGCAAAAGGGATCTGTCACATTTGCTGTTGACTATGAGTTTGCTGCAAGATCAAAGCCAACTGAGGAGTATGTGAGCAAGTACAAAGGGAACTACACATTCACAGGAGGAAAGGCTGTTGGATATCGTAACCTGTTTGGTATTGCTTGGAACGCTTTCATGGCTGATGACAGCCATTATTTCATCAATGGTATCCTTCATCTACGGGCTGAACTCACGATCAGGCAATGA 1551 45.91 MTKIIKSNHDYLILFSDDDHQNNLISLPPFRIFPYCSPFSFWSFSRAMKDSNVDLFDPRTIMDSDLSPSGVAGGSVSDSDFAFAFNDSNFSDRLLRIEIIADLPESKGDGEGCNSIADWARNRKRRREEIKKENAVDVHHEEQILNCNMPDTEDGVAYENQDEEAVAMIEESPPGVGMNLSQHGDEAGHSSDSSWGMDCSTVLRVKTLHISSPILAAKSPFFYKLFSNGMRESEQRHVTLRIHASEEAALMDLLNFMYSNTLSTTTPTALLDVLMAADKFEVASCMRYCSRMLRNLPMTCESALLYLDLPSSVLMAEAVQPLTDAAKQFLAGRYKDVTKFQEEVLNLPLAGIEAVLSSDDLQVASEDAVYDFVLKWARIHYPKLEDRREILGSRLGRLIRFPYMTCRKLKKVLTCNDFDTELASKVVLEALFFKAEAPYRQQKGSVTFAVDYEFAARSKPTEEYVSKYKGNYTFTGGKAVGYRNLFGIAWNAFMADDSHYFINGILHLRAELTIRQ* 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 863508 867965 + Vvi2g83 Vvi2g83 782782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g83 516 PANTHER OS02G0260700 PROTEIN 52 442 IPR045890 -
Vvi2g83 516 PANTHER OS02G0260700 PROTEIN 441 492 IPR045890 -
Vvi2g83 516 Gene3D Potassium Channel Kv1.1; Chain A 189 332 IPR011333 -
Vvi2g83 516 SMART BACK_2 312 414 IPR011705 -
Vvi2g83 516 CDD BTB_POZ_ZBTB_KLHL-like 198 280 - -
Vvi2g83 516 Pfam BTB/POZ domain 197 294 IPR000210 GO:0005515
Vvi2g83 516 PANTHER PUTATIVE-RELATED 441 492 - -
Vvi2g83 516 PANTHER PUTATIVE-RELATED 52 442 - -
Vvi2g83 516 Pfam BTB And C-terminal Kelch 320 412 IPR011705 -
Vvi2g83 516 ProSiteProfiles BTB domain profile. 197 266 IPR000210 GO:0005515
Vvi2g83 516 SUPERFAMILY POZ domain 192 294 IPR011333 -
Vvi2g83 516 Gene3D - 333 435 - -
Vvi2g83 516 SMART BTB_4 199 297 IPR000210 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g83 - - - vvi:104881174 771.155
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g83 Vvi15g776 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g83 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0261 Cone12ag0267 . . . . . . . . . . . . . . . . . Cma06g01039 . Car06g00872 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069979 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1