Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi2g84	ATGAAACTTGATAAAATTTACAAGTTACAAGGAAGCTTCTACTTGAAGCCTAAAAAAGTGTGTAGCTTTGTTAGGGCAATAAGGCACAACATGGGTGAGGATCTCTGGGATGTTTTCTGTGGAAATTCTGGGTGTTCGAGAAAAGTTGGAAAGATATGTACGACAAAGCTTTTACCCTCCCAAAAGTCTAGATGCTCTACCAAAATGCCAAATTCAGCAGCCATTTTTAACGGCTTCACATGGTCTTTGCTGGGTGTAGCTGTGTGGTTTAAAAGGCATCAACTTGCAGAGATCACTTTGATGAGGCTTTGTTCAATATTTGCCTTCTTTTTTGCTGGCTTTCTTTGTCTTCAATCTTTGTGGGAGCCCATTGTGGAGAATGCAGAATTGGTTAAGATAGTTTTAGATATTTTATCTTTTCCTGGAGCAATTCTACTGCTGTTCTGCACTTTTTGGACACCAGAATATGCAGAAACTAAAGGAGATACCAATGGTGCTGCCTTCTATACACCTTTATCATGTGAAGAAGCCTGTGGTGGCAGTAAGATTAATTCAGAAGACAACTTAACTCCTTTTGCAAAAGCTGGATTTCTGAGTAGAATGTCATTTTGGTGGTTAAATTCATTGCTGAAGAAGGGTAAGAAGAAAACTCTTGAGGATAGAGACGTTCCACTGTTACGGAGGGAAGATCGAGCAGAAACGTGTTACTCCATGTTCTTGGAACAACAGAACAAACAGAAGCAAAAAGAATCATCTGATCCTCCTTCAATGTTGACAACGATCTTCTTTTGCTATTGGAAAGAGATTTTCATTACAGGCTTATTTGCATTGATCAAGGTGCTTGCACTGGCTACTGGGCCTTTGTTTGTTAGGGCCTTCATTATGGTTGCTGAAGGCAAAGAAGCTTTTAAGTATGAGGGCTATGCACTGACAGGAGGACTCTTCCTCACTAAATGCTTAGAATCGTTATTGGAGAGGCAATGGTTCTTTCGAACTAGACTAATCGGGCTCCAAGTGAGATCCTTGCTGTCTGCAGCCATTTATCAGAAGCAGCTTCGACTCTCAAACACTGCAAAGGCATCTCATTCCTCTGGTGAGATAATGAATTATGTTACTGTAGACACTTACAGAATAGGTGAATTCCCATACTGGCTTCACCAGGTATGGTCAACAAGCCTCCAGATGTGTCTTGCGATACTTATTGTTTACTATTCACTGTATGCTTGGGAGACACACTTCAAGAATGTTATAGAAGGGTTAAGGAAAGAGGAATCTCAGTGGCTATCAGCAGTTCTAATGAAGAGAGCACAAAAATTGGTCCTGTTTTGGTCATGTCCTGTTCTTGGATCAGCTGCTACTTTCTGGGCATGTTACTTTCTAGGAATTCCTCTCACTGCAAGTAGTGCTTTTACATTTCTGGCAAGTTTACGCATTGTTCAGGAGCCAATTAGGTTAATCCCTGAAGTTGTTTCAGCATTCATTGAAGCAAAGGTTTCATTAACTCGGATTGTAAAGTTTCTTGAGGCACCTGAGGCTGACAGAATTTCATGGGATAATAACTCTACAAGGGCCACATTAAGGAACATAAATTTAGTGGTTAAACATGGGGAAAAAGTAGCTATTTGTGGGGAGGTTGGCTCTGGTAAATCAACGCTTTTAGCTGTTATTCTTGGAGAAGTTCCACATGTCGATGGCAAAGTTCAAGCATATGGAAAGATGGCTTATGTCTCTCAGGCAGCATGGATCCAAACAGGGACTATACAAGAAAATATTCTGTTTGGGTCTGCCATGGACCCATACAGATACAGGGAGGTGATTGAAAAGTGTTCCCTAGTGAAGGACCTCGAGATGCTTCCATTCGGTGACCTCACTGAAATAGGAGAAAGAGGTGTTAATCTAAGTGGTGGACAGAAGCAGCGGGTTCAACTTGCACGTGCATTGTATCAGGATGCAGATGTATATCTCCTGGATGATCCATTCAGTGCTGTTGATGCTCATACTGCAGCTAGTCTGTTTAATGAATATGTAATGGGAGCTCTATCAAGCAAGACAGTCATACTTGTGACCCACCAAGTAGACTTCCTTCCTGCATTCGATTCTGTTTTGCTAATGTCTGAAGGGGAAATCCTGCAAGCTGCTACCTATGACCAGTTGATGCACTCTAGGGATCAGTTAATTAAGAAAGAAGAAAGAGAGACGGGAGACACTGGCTTCAAACCTTATATACAGTACTTGAAACAGAGCAAGGGCTTCTTGTACTTCTCATTCAAACCGAAACTGCTTACTGTATATACAGTGATTGGATTTAGCATGATAATTTTTTTGTTCTTCAGGTCCATTTTTATAGTTGTTTTAGGCCTTAGAGCATCGGAATCTATTTTTTCTACACTGCTGAGCTCTCTTTTCCAAGCACCAATGTTCTTTTATGACTCTACACCTCTGGGAAGGATACTCAGTCGGGTATCTTCTGATTTGAGTGTGGTTGACCTTGATTTGGCCTTCAAATTAACTTTTGCTGTTGGGGCAGCTGTGACTACATACTCCAGTTTTGGAGTGGTAGCTATTTTTGCCTGGCAACTCTTGTTTGTCATTGTACCCACAATTTATCTAACGACACTTATTCAGAGCTACTACTTTGCTTCCGCAAAAGAGTTGATGCGAATCAGTGGCACAACTAAGTCTCTCGTTGCTAGCCATCTTGCTGAGTCTGTTGCTGGAGCTATGACAATCAGAGCTTTCAGGGAGGAAGATAGACTCTTTTCGAAGAATTTGGACCTCATTGACACAAATGCAAGTCCTCTCTTTCATAATTTTACTGCAAATGAATGGTATATCCAACGTCTTGAAATAATATCTGCAATTGCTCTCTCATCTGCTGCCCTTGCCCTGACTTTGCTTCCTGAAGGAGCTTCTAAATCAGGATTTGTTGGAATGGCATTGTCATACGGTCTTTCATTGAATGTATTCCTTGTATTTACTGTCCAAAACCAGTGCAGTCTAGCAAATATGATCATTTCTGTCGAAAGGCTAGAACAGTACATGCATATTCCTAGTGAAGCCCCTGAAGTAATAGAATATAATCGACCTCCACCCAACTGGCCTGCTATTGGTGAAGTGGAAATTTGTGATTTGAAGGTCAGATATCAACCCAACAGTCCTCTAGTTCTTCAGGGAATTAGTTGCAAATTTGAAGGAGGGCAGAAAATTGGGATTGTTGGCCGGACTGGTAGCGGGAAGACAACTCTTATCAGCACATTGTTTCGCTTGGTAGAGCCTACAGAGGGACACATAATTATAGATGGCCTAAATATTTCCACAATTGGCCTTTATGACCTCAGATCACGTCTTGGGATCATTCCACAGGAACCAACTCTTTTTAGTGGGTCAGTAAGATACAATCTGGACCCTCTGTCAAGGCATACTGATCATGAAATATGGGAGGTTCTTGGAAAATGTCAGCTTCGTGGAGCTGTTGAAGAGAAGGATGAGGGCCTAGACTCCTTAGTTGTACAAGACGGATCAAACTGGAGCATGGGCCAGCGACAATTATTCTGTTTGGCGCGTGCTCTACTGAAGAAAAGCCGGATACTAGTCCTTGATGAGGCCACTGCATCCATTGACAATGCAACCGACTCCATTCTCCAGAAGACCATAAGAACAGAATTTGCAGATTGCACCGTAATAACTGTAGCCCACAGAATCCCAACTGTGATGGACTGCACAATGGTGCTTACCATCAGTGATGGAAAATTGGTAGAGTATGATGAGGTGTCAAAGCTGATAAACAAGGAAGGATCGCTGTTTGGGCAGCTCGTCCACGAATACTGGTCTCGGGCTTCGAATTTTACAGCTTTCCGTCACTTCACTTTCTCAGAATCAGAACACCCCTCTTATACACATACTAGAGTACATCTCCATCGACGCTCGGTCTTTTGCTCTGAATCTTTCTCAGCTGCCAAACGTCCCTCTCAGCTCTCCCTAAATGGAAGCCTCCACTCTCTCACGAATCGGCCTCGCCGGCCTGGCCGTCATGGGCCAAAACCTAGCTCTCAACATCGCCGAAAAAGGGTTTCCGATCTCCATCCATTGTTATCCTCGTCAAGGCCGGCGCTCCCGTCGACCAAACCATTGCTGCTTTCTTCTGGCAAGGGCATTCTGTATCTGGGCATGGGCGTCTCCGGTGGCGAAGAGGGTGCGCGCCACGGCCCGTCGTTGATGCCCGGTGGATCTTATCAGGCGTATCAGAACATCGAGGATATTGTGAAGAAAGTGGGGTTTGCCAGGAGTGGGGTCGATAAGAAGAGGTTGATTGATGATGTGAGGCAGGCATTGTATGCCTCAAAGATTTGTAGTTATGCTCAGGGAATGAATCTGTTGAGGGCGAAGAGTGTTGAGAAGGGTTGGAATTTGAATTTCGGGGAGTTGGCAAGGATTTGGAAAGGTGGGTGTATCATAAGGGCAGTGTTTTTGGACCGAATCAAGAAGGCATATCAGAGGAATCCAAATTTAGCAAGTTTGATTGTGGACCCTGAGTTTGCAAGGGAGATGGTGCAGAGGCAGGCAGCATGGAGGAGAGTCGTGGGCTTGGCGATTTCTGCAGGGATTAGTACTCCTGGAATGTGTGCTAGTCTTGCTTATTTTGATACATATAGGCACCTTGCAGTTCTTCAGCTGCTAATAAGTAGTGCATGCCTTTTGAGTTATGCTGGCCAAATGAATGCCAAATGTTTTCTTTCCCTTCCAGTAGAGAAGATAAAGAGTTTCCTAATGGCCACGAGAAATCAATTCCATTTTCTCTTCTCATTCATTACTGTGCTTGAATTGTTTTTTAGAATGGGAACGAGAGTAAGAAATTCATTAACATGGAAACCAAATCTCACTGGGATTTTGATTCCTCACTTCTACATGTAA	4911	43.11	MKLDKIYKLQGSFYLKPKKVCSFVRAIRHNMGEDLWDVFCGNSGCSRKVGKICTTKLLPSQKSRCSTKMPNSAAIFNGFTWSLLGVAVWFKRHQLAEITLMRLCSIFAFFFAGFLCLQSLWEPIVENAELVKIVLDILSFPGAILLLFCTFWTPEYAETKGDTNGAAFYTPLSCEEACGGSKINSEDNLTPFAKAGFLSRMSFWWLNSLLKKGKKKTLEDRDVPLLRREDRAETCYSMFLEQQNKQKQKESSDPPSMLTTIFFCYWKEIFITGLFALIKVLALATGPLFVRAFIMVAEGKEAFKYEGYALTGGLFLTKCLESLLERQWFFRTRLIGLQVRSLLSAAIYQKQLRLSNTAKASHSSGEIMNYVTVDTYRIGEFPYWLHQVWSTSLQMCLAILIVYYSLYAWETHFKNVIEGLRKEESQWLSAVLMKRAQKLVLFWSCPVLGSAATFWACYFLGIPLTASSAFTFLASLRIVQEPIRLIPEVVSAFIEAKVSLTRIVKFLEAPEADRISWDNNSTRATLRNINLVVKHGEKVAICGEVGSGKSTLLAVILGEVPHVDGKVQAYGKMAYVSQAAWIQTGTIQENILFGSAMDPYRYREVIEKCSLVKDLEMLPFGDLTEIGERGVNLSGGQKQRVQLARALYQDADVYLLDDPFSAVDAHTAASLFNEYVMGALSSKTVILVTHQVDFLPAFDSVLLMSEGEILQAATYDQLMHSRDQLIKKEERETGDTGFKPYIQYLKQSKGFLYFSFKPKLLTVYTVIGFSMIIFLFFRSIFIVVLGLRASESIFSTLLSSLFQAPMFFYDSTPLGRILSRVSSDLSVVDLDLAFKLTFAVGAAVTTYSSFGVVAIFAWQLLFVIVPTIYLTTLIQSYYFASAKELMRISGTTKSLVASHLAESVAGAMTIRAFREEDRLFSKNLDLIDTNASPLFHNFTANEWYIQRLEIISAIALSSAALALTLLPEGASKSGFVGMALSYGLSLNVFLVFTVQNQCSLANMIISVERLEQYMHIPSEAPEVIEYNRPPPNWPAIGEVEICDLKVRYQPNSPLVLQGISCKFEGGQKIGIVGRTGSGKTTLISTLFRLVEPTEGHIIIDGLNISTIGLYDLRSRLGIIPQEPTLFSGSVRYNLDPLSRHTDHEIWEVLGKCQLRGAVEEKDEGLDSLVVQDGSNWSMGQRQLFCLARALLKKSRILVLDEATASIDNATDSILQKTIRTEFADCTVITVAHRIPTVMDCTMVLTISDGKLVEYDEVSKLINKEGSLFGQLVHEYWSRASNFTAFRHFTFSESEHPSYTHTRVHLHRRSVFCSESFSAAKRPSQLSLNGSLHSLTNRPRRPGRHGPKPSSQHRRKRVSDLHPLLSSSRPALPSTKPLLLSSGKGILYLGMGVSGGEEGARHGPSLMPGGSYQAYQNIEDIVKKVGFARSGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSVEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLIVDPEFAREMVQRQAAWRRVVGLAISAGISTPGMCASLAYFDTYRHLAVLQLLISSACLLSYAGQMNAKCFLSLPVEKIKSFLMATRNQFHFLFSFITVLELFFRMGTRVRNSLTWKPNLTGILIPHFYM*	1637

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
2	870870	883981	-	Vvi2g84	Vvi2g84	782783

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vvi2g84	1636	CDD	ABC_6TM_ABCC_D2	761	1014	IPR044726	GO:0140359
Vvi2g84	1636	CDD	ABCC_MRP_domain2	1037	1255	-	-
Vvi2g84	1636	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	270	404	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
Vvi2g84	1636	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	760	1002	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
Vvi2g84	1636	Pfam	ABC transporter	1056	1204	IPR003439	GO:0005524
Vvi2g84	1636	Pfam	ABC transporter	526	660	IPR003439	GO:0005524
Vvi2g84	1636	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	1381	1425	IPR036291	-
Vvi2g84	1636	Gene3D	ABC transporter type 1, transmembrane domain	736	1022	IPR036640	GO:0005524\|GO:0016021
Vvi2g84	1636	SUPERFAMILY	ABC transporter transmembrane region	258	511	IPR036640	GO:0005524\|GO:0016021
Vvi2g84	1636	CDD	ABC_6TM_ABCC_D1	271	503	IPR044746	GO:0140359
Vvi2g84	1636	Pfam	NAD binding domain of 6-phosphogluconate dehydrogenase	1383	1425	IPR006115	GO:0050661
Vvi2g84	1636	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY C	73	406	-	-
Vvi2g84	1636	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY C	406	721	-	-
Vvi2g84	1636	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY C	759	1281	-	-
Vvi2g84	1636	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY C	723	756	-	-
Vvi2g84	1636	MobiDBLite	consensus disorder prediction	1327	1376	-	-
Vvi2g84	1636	Pfam	ABC transporter transmembrane region	760	965	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
Vvi2g84	1636	Pfam	ABC transporter transmembrane region	270	405	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
Vvi2g84	1636	Gene3D	-	1023	1274	IPR027417	-
Vvi2g84	1636	Pfam	6-phosphogluconate dehydrogenase, C-terminal domain	1428	1557	IPR006114	GO:0004616\|GO:0006098
Vvi2g84	1636	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	1039	1273	IPR003439	GO:0005524
Vvi2g84	1636	SUPERFAMILY	ABC transporter transmembrane region	756	1019	IPR036640	GO:0005524\|GO:0016021
Vvi2g84	1636	Gene3D	-	1410	1552	IPR013328	GO:0016491
Vvi2g84	1636	SMART	6PGD_2	1384	1563	IPR006114	GO:0004616\|GO:0006098
Vvi2g84	1636	Gene3D	ABC transporter type 1, transmembrane domain	239	405	IPR036640	GO:0005524\|GO:0016021
Vvi2g84	1636	Gene3D	ABC transporter type 1, transmembrane domain	406	509	IPR036640	GO:0005524\|GO:0016021
Vvi2g84	1636	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	498	731	IPR003439	GO:0005524
Vvi2g84	1636	MobiDBLite	consensus disorder prediction	1337	1351	-	-
Vvi2g84	1636	Gene3D	-	510	735	IPR027417	-
Vvi2g84	1636	PANTHER	ABC TRANSPORTER C FAMILY MEMBER 10-LIKE	723	756	-	-
Vvi2g84	1636	PANTHER	ABC TRANSPORTER C FAMILY MEMBER 10-LIKE	406	721	-	-
Vvi2g84	1636	PANTHER	ABC TRANSPORTER C FAMILY MEMBER 10-LIKE	759	1281	-	-
Vvi2g84	1636	PANTHER	ABC TRANSPORTER C FAMILY MEMBER 10-LIKE	73	406	-	-
Vvi2g84	1636	SUPERFAMILY	6-phosphogluconate dehydrogenase C-terminal domain-like	1424	1554	IPR008927	-
Vvi2g84	1636	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	518	723	IPR027417	-
Vvi2g84	1636	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	1029	1266	IPR027417	-
Vvi2g84	1636	SMART	AAA_5	535	708	IPR003593	-
Vvi2g84	1636	SMART	AAA_5	1065	1248	IPR003593	-
Vvi2g84	1636	CDD	ABCC_MRP_domain1	515	708	-	-
Vvi2g84	1636	ProSitePatterns	ABC transporters family signature.	633	647	IPR017871	GO:0005524

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi2g84	K05666	ABCC2; ATP-binding cassette, subfamily C (CFTR/MRP), member 2	-	vvi:100244944	2309.26

WGDs- Genes

Select	Gene_1	Gene_2	Event_name
	Vvi2g84	Vvi16g846	ECH

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi2g84	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0003473	1	1	1	2	1	1	2	1	1	1	1	1	2	1	1	2	1	2	2	1	1	3	1	1	1	1	1	4	1	8	48