Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g843 ATGTCAATCATATTGATCATCTGGTTATATTATGAAAGCAATGGAAAGCATTTACATGTTAAGAAATTATTTCAGGGTGAAGGGGAACAAAAACATGTTGGCAGAATCTTAGAGTTTTTTAAAACAACAGAAGGTGAAGATTATTTTAGGGTTCAATGGTTTTATAGAGCTGAAGATACAGTTATGAAAGAAGAAGCTGCTTCCCATGACAAGAAGCGCATATTCTGTTCCACTATAATGAATGATAATTCACTAGATTGTATTATTTCTAAAGTCAATGTTCTAGAACTAACTCCTAGGGTAAGTTTGAAATTGGACTCTATTCCACCATTTGATTATTATTACGATATGAAGTACAATGTGGAATATTCAACATTTCACACCTTGCTAAGTGTGAAGGGTTATGATTTAGTCTCACCTAATTGCATTGAGACTCCCCTTAGTGTAGCCAATACGACTTTCCCAGAGGATATGGATGGTTGCAAACCTGACAAAGCCGAATTAGCATTATTAGATCTTTATTCTGGTTGTGGTGGAATGTCAACTGGCTTGTGCCTTGGTGCCAAGCTTTCTTGTGTTAATCTTGTGACGAAGTGGGCCCTTGATTTTGATAAATCAGCTTGTGAGAGTTTGAAATTAAATCATCCAGAAACTCAAGTCAGGAATGAAACTGCCGAGGATTTTCTGGATCTATTAAAAGAATGGGAAATGCTATGTGAACAGTATGCACTCAATCTTGTAGAAAGAAAATCCCAGTCTAGGTCAAATGTCTTGAGAACATCCAAGAGCAATATAAATTCTCCACATGACATTAAAGTTGCCACTGATGAACTTGAAATTTTGAAACTTGTTGATATTTGTTATGGTGATCCCAGCGAAACAGGCAAACGTGGGCTGAAATTTAAGGTGCGCTGGAAGGGTTATGGTCCAAGTGAAGATACATGGGAACCAATTGAAGGATTGAGTAATTGCCAGGAAGGGATATACGATTTTGTAAGAAATGGACTGAAATCTAAAATTTTGCCACGCCCAGGTGATGTTGATGTTATCTGTGGGGGCCCTCCTTGCCAAGGGATTAGTGGTTATAATCGCTTTAGAAATGTCGATTCCCCACTTTCTGATGAAAGAAATCACCAAATAGTAATCTTCATGGACATAGTGAAATTCTTAAAGCCCAAATATGTGTTAATGGAAAATGTGGTTGACCTATTAAAGTTGGATAAAGCTTCTTTGGGAAGATATGCCATTAGCCGTTTGGTGCACATGAAATACCAAGCAAGGCTAGGAATGATTGCTGCAGGCTGTTATGGTCTTCCACAATTTCGGTTGCGTGTTTTCCTGTGGGGTGCTCATCCTGGTGAGAGTCTACCCCAATTTCCACTTCCTACGCATGATGTTGTTGCAAAATATTGGCCTCCATCTGAGTTTGAGTGCAATATTGTTGCTTATGATGAAGGCCAACCTCGTGAACTAGAAAAAGCCGTTGTTCTTCGTGATGCTATATCTGATCTTCCAGCTGTCACAAACTATGAAACTCGTGATGAGATGCTTTATGGAAAGCCTCCAGAAACAGAGTTTCAAAAATATATAAGGTCAACTAAAGATGCGATGGCTGGTTCTTCATCAAGTGGTATTACAAAAGGGTACAACTCCATACTATATGACCATCGGCCTTACCCATTAAACGAGGATAATTATTTACGGATTTGTCAAATTCCTCGAAGGAAGGGAGCAAATTTCAGGGACCTCTCCGGTGTAATTGTAGGAACTGATAATGTGGCTGTACGGGATCCAACAATGAAGCCAATACTTTTGCCATCTGGACATCCACTGGTACCAGATTGCGTCTTTTCTTATGAACAAGGGAAGTCTAAAAGGCCATTTGCAAGATTATGGTGGGATGAGACCGTGCCAACTGTATTGACATTTCCATATCTTCGCAACCAGGCAATATTACATCCAGAGCAGGACCGTGTCCTCACCATACGCGAGTGTGCAAGGTTGCAAGGCTTTCCTGATTATTATAGGTTCCGTGGGACAGTTAAAGAGAGATACTGTCAAATTGGAAATGCAGTTGCATTTCCAGTTGCACGAGCCTTGGGATATATGCTGGGGATGGCGTTTCAGAATCAGAGTGGGAATGAAGCGCTCGCAACTCTTCCACTCAAGTTTTCTCATTCAATGGTCTAG 2190 40.0 MSIILIIWLYYESNGKHLHVKKLFQGEGEQKHVGRILEFFKTTEGEDYFRVQWFYRAEDTVMKEEAASHDKKRIFCSTIMNDNSLDCIISKVNVLELTPRVSLKLDSIPPFDYYYDMKYNVEYSTFHTLLSVKGYDLVSPNCIETPLSVANTTFPEDMDGCKPDKAELALLDLYSGCGGMSTGLCLGAKLSCVNLVTKWALDFDKSACESLKLNHPETQVRNETAEDFLDLLKEWEMLCEQYALNLVERKSQSRSNVLRTSKSNINSPHDIKVATDELEILKLVDICYGDPSETGKRGLKFKVRWKGYGPSEDTWEPIEGLSNCQEGIYDFVRNGLKSKILPRPGDVDVICGGPPCQGISGYNRFRNVDSPLSDERNHQIVIFMDIVKFLKPKYVLMENVVDLLKLDKASLGRYAISRLVHMKYQARLGMIAAGCYGLPQFRLRVFLWGAHPGESLPQFPLPTHDVVAKYWPPSEFECNIVAYDEGQPRELEKAVVLRDAISDLPAVTNYETRDEMLYGKPPETEFQKYIRSTKDAMAGSSSSGITKGYNSILYDHRPYPLNEDNYLRICQIPRRKGANFRDLSGVIVGTDNVAVRDPTMKPILLPSGHPLVPDCVFSYEQGKSKRPFARLWWDETVPTVLTFPYLRNQAILHPEQDRVLTIRECARLQGFPDYYRFRGTVKERYCQIGNAVAFPVARALGYMLGMAFQNQSGNEALATLPLKFSHSMV* 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14951307 14983872 + Vvi2g843 Vvi2g843 783542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g843 729 Gene3D - 14 115 IPR043151 -
Vvi2g843 729 PRINTS Cytosine-specific DNA methyltransferase signature 169 185 IPR001525 GO:0008168
Vvi2g843 729 PRINTS Cytosine-specific DNA methyltransferase signature 391 405 IPR001525 GO:0008168
Vvi2g843 729 PRINTS Cytosine-specific DNA methyltransferase signature 437 450 IPR001525 GO:0008168
Vvi2g843 729 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 168 704 IPR029063 -
Vvi2g843 729 CDD CD_CMT3_like 277 333 - -
Vvi2g843 729 Pfam BAH domain 28 127 IPR001025 GO:0003682
Vvi2g843 729 ProSiteProfiles C-5 cytosine-specific DNA methylase (Dnmt) domain profile. 168 711 IPR001525 GO:0008168
Vvi2g843 729 PANTHER CYTOSINE-SPECIFIC METHYLTRANSFERASE 25 728 - -
Vvi2g843 729 ProSitePatterns Chromo domain signature. 301 321 IPR023779 -
Vvi2g843 729 PANTHER DNA (CYTOSINE-5)-METHYLTRANSFERASE CMT2 25 728 - -
Vvi2g843 729 SUPERFAMILY Chromo domain-like 269 342 IPR016197 -
Vvi2g843 729 SMART BAH_4 16 130 IPR001025 GO:0003682
Vvi2g843 729 Gene3D DNA Methylase, subunit A, domain 2 496 670 - -
Vvi2g843 729 Pfam C-5 cytosine-specific DNA methylase 344 701 IPR001525 GO:0008168
Vvi2g843 729 ProSiteProfiles BAH domain profile. 10 130 IPR001025 GO:0003682
Vvi2g843 729 ProSitePatterns C-5 cytosine-specific DNA methylases active site. 348 360 IPR018117 -
Vvi2g843 729 Pfam Chromo (CHRromatin Organisation MOdifier) domain 294 332 IPR023780 -
Vvi2g843 729 ProSiteProfiles Chromo and chromo shadow domain profile. 278 343 IPR000953 -
Vvi2g843 729 SMART chromo_7 277 336 IPR000953 -
Vvi2g843 729 Gene3D Vaccinia Virus protein VP39 170 721 IPR029063 -
Vvi2g843 729 TIGRFAM dcm: DNA (cytosine-5-)-methyltransferase 345 700 IPR001525 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g843 K00558 DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] - vvi:100255190 1447.57
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g843 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011528 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 31