Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g86 ATGCTAAATTCTGCTGCCTTTCTTAATGGTAGTTTGGGGTTGGTTCATCTGGGATTGGGAATCTGGATTTTGAGAGAGAAGCTGAGTGAAGAGAACACCATTCTACCTCTGCATGGCTGGCTAGCGATTTTATTACAAGGCTTCACCTGGTTTTTTCTGGGTTTAGCTGTGAGGTTTAGGAGGCATCAACTTCTACATATTGCAGGGCTGAGGCTCTGTTCAGTACTTGCATTCTTTATTGCAGGAACTGATTCAGAAATTGATGGACAAAGACATTCCTCAGCTAAGAAAGGAAGATCGAGCGGAAATGTGCTACTTAATGTTCATGGAACAGCAGAACAAGCAGAAAAACAAGCGCAGCTTAAGCTCTCAAATGCTGCAAAGGGGTCGTATTCCCCTGGTCAGATCATTAACTTTGTTACCATTGATGCTTACAAAATAGGTGAATACCCGTACTGGTTTCACCAGATATGGTCAACAAGCCTCCAGTTATTTACAACACAAGTACCAGAAAACGCTCATGGGAACTCAGGACAAGAGACTGAAGGCTTTCACAGAGGCACTTACAAACATGAAAATTCTGAAGCTGTATGCTTGGGAGACTCATTTCAAGAATGTCATAGAAGGGAATCCATTTTTATCAAGAGCAACAGAATTTCATGGGAGGATAACTCCACAAGGGCTACGCTAAGGAACATAAATTTGGTGGTTAAGCCTGGGGAAAAGGTAGCCATTTGTGGAGAGGTTGGCTCAGGCAAATCGACACTATTAGCTGCTATTCTTGGAGAAGTTCCACACGTTAATGGCATAGTTCGAGTTTATGGAAAGATTGCTTACGTCTCTCAGACAGCATGGATTCCAACAGGTACCATAAGAGAAAATATTCTGTTTGGGTCTGCTATGGATCCTTACAGATACAGAGAGGCTATTGAGAAGTGTGCCCTAGTGAAGGACCTTGAGATGCTTCCATTTGGTGATCTCACTGAAATAGGAGAAAGAGGTGTTAATCTGAGTGGTGGACAGAAGCAGAGGGTTCAACTCGCACGCGCATTATATCAGGATGCAGATGTATATCTCCTGGATGATCCATTTAGTGCGGTCGATGCACATACTGCAACCAGTCTATTTAATGAATATGTCATGGGAGCTCTATCAACGAAGACAGTCATACTTGTGACCCACCAAGTGGACCTCCTTCCTGCATTTGATTCAGTTTTGTTAATGTCTGAAGGGGAAATCCTGGAAGCTGCTACCTATGACCTGCTGATGCACTCTAGTCAAGAGTTCCAGGACCTTGTTAATGCACACAATGCCACAGTTGGTTCTGAGATGCAACCTGAGCATGATTCTACCCAGAAATCTAAAATTCCGAAGGGAGAGATACAGGAGATTTGCACCGAGAAACAATTGAGAGACACATCAGGAGAGCAGTTAATTAAGAAAGAAGAAAGAGAAACGGGAGACACTGGTCTCAAGCCTTACCTACAATACTTGAAATACTGCAAGGGATTCTTGTACTTCTTTTTGGCAACTCTATCTCATGTCATATTCATTGTTGGACAGTTGGTGCAAAACTATTGGTTGGCTGCAAATGTCCAGAATTCTAGTGTTAGCCAATTGAAACTGATTGCAGTATACACAGGGATCGGATTAAGCTTATCACTCTTTTTGTTGCTCCGGTCTTTTTTTGTTCTTTTAGGCCTTGGGGCATCACAATCTATTTTCTCTACACTGCTGAGCTCTCTTTTTCGAGCACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGGGTATCTTCCGATTTGAGTGTGGTTGACCTTGATGTGGCCTTCAAATTTACTTTTTCTGTTGGGGCAGCTATGAATACTTATGCCAGTTTTGGAGCATTGGCTATTCTTGCCTGGGAACTTGTGTTAGTCATTTTACCAACAATTTATCTAAGTATACTCATCCAGAGGTACTACTTTGCTGCTGGAAAAGAGTTGATGCGAATCAATGGCACAACCAAGTCTTTTGTTGCAAGCCATCTTTCTGAGTCCATTGCTGGAGCTATGACAATTAGAGCTTTCGGGGACGAAGATAGACACTTTTCAAAGAATTTGGGCTTCATTGACATAAATGCAAGTCCATTCTTCTACAGTTTCACAGCAAATGAGTGGTTGATCCAACGCCTTGAAATACTATGTGCAATCGTTCTCTCATCTTCAGCCCTTGCCCTAACTTTGCTTCACACAAGTGCTGCTAAAGCTGGATTTATTGGAATGGCATTGTCATATGGTCTTTCAGTGAATGCATTCCTCGTATTTTCTGTCCAAAGCCAGTGCCTTTTAGCAAATATGATTGTTTCTGTTGAAAGATTAGAACAGTTCTTGAATATTCCTAGCGAAGCCCCTGACGTCATGGAGAGCAATCAACCACCACTCAGTTGGCCTGCTATTGGTGAAGTGGAAATTTATGATTTGAAGGTCAAGTATCGGCCCAATGCTCCTCTAGTTCTTCAAGGAATTAGTTGCAAATTTGGAGGAGGACAAAAAATTGGGATCGTTGGCCGGACTGGTAGTGGAAAGACAACACTTATCAGCACTTTGTTTCGCTTGGTAGAGCCTACAGAGGGACGGATAATTATAGATGGCATAAATATTTCCACAATTGGGGTTCATGATCTCAGATCACGTCTTGGGATCATTCCACAAGAACCAACTCTTTTTAGCGGATCTGTAAGATACAATCTTGACCCTTTATCACTGCATACTGATGAGGAAATATGGGAGGTTCTGGAAAAATGTCAACTTCGAGGGGCTGTTCAAGAGAAAGAAGAGGGTCTGGACTCCTTAGTTGTACAAGACGGATCAAATTGGAGCATGGGCCAGCGACAATTATTCTGTTTGGGACGTGCTCTACTGAAGAGAAGTCGGATACTAGTGCTCGATGAAGCCACAGCATCCATTGACAATGCGACAGACTCCATTCTCCAGAAGACAATAAGGACAGAATTTGCAGACTGCACTGTAATAACAGTAGCCCACAGAATCCCAACCGTGATGGACTGCACAATGGTGCTTGCTATCAGCGATGGAAAATTGGTAGAGTATGATGAGCCAATGAAGCTGATAAAGGAGGGATCGCTGTTTGGCCAGCTTGTCAAGGAGTACTGGTCTCGCTCTTCAAATGGCAGAAACACCTCCGAAGATTGGCTCTGA 3213 42.98 MLNSAAFLNGSLGLVHLGLGIWILREKLSEENTILPLHGWLAILLQGFTWFFLGLAVRFRRHQLLHIAGLRLCSVLAFFIAGTDSEIDGQRHSSAKKGRSSGNVLLNVHGTAEQAEKQAQLKLSNAAKGSYSPGQIINFVTIDAYKIGEYPYWFHQIWSTSLQLFTTQVPENAHGNSGQETEGFHRGTYKHENSEAVCLGDSFQECHRRESIFIKSNRISWEDNSTRATLRNINLVVKPGEKVAICGEVGSGKSTLLAAILGEVPHVNGIVRVYGKIAYVSQTAWIPTGTIRENILFGSAMDPYRYREAIEKCALVKDLEMLPFGDLTEIGERGVNLSGGQKQRVQLARALYQDADVYLLDDPFSAVDAHTATSLFNEYVMGALSTKTVILVTHQVDLLPAFDSVLLMSEGEILEAATYDLLMHSSQEFQDLVNAHNATVGSEMQPEHDSTQKSKIPKGEIQEICTEKQLRDTSGEQLIKKEERETGDTGLKPYLQYLKYCKGFLYFFLATLSHVIFIVGQLVQNYWLAANVQNSSVSQLKLIAVYTGIGLSLSLFLLLRSFFVLLGLGASQSIFSTLLSSLFRAPMSFYDSTPLGRILSRVSSDLSVVDLDVAFKFTFSVGAAMNTYASFGALAILAWELVLVILPTIYLSILIQRYYFAAGKELMRINGTTKSFVASHLSESIAGAMTIRAFGDEDRHFSKNLGFIDINASPFFYSFTANEWLIQRLEILCAIVLSSSALALTLLHTSAAKAGFIGMALSYGLSVNAFLVFSVQSQCLLANMIVSVERLEQFLNIPSEAPDVMESNQPPLSWPAIGEVEIYDLKVKYRPNAPLVLQGISCKFGGGQKIGIVGRTGSGKTTLISTLFRLVEPTEGRIIIDGINISTIGVHDLRSRLGIIPQEPTLFSGSVRYNLDPLSLHTDEEIWEVLEKCQLRGAVQEKEEGLDSLVVQDGSNWSMGQRQLFCLGRALLKRSRILVLDEATASIDNATDSILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGKLVEYDEPMKLIKEGSLFGQLVKEYWSRSSNGRNTSEDWL* 1071
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 886846 894005 - Vvi2g86 Vvi2g86 782785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g86 1070 Gene3D ABC transporter type 1, transmembrane domain 468 801 IPR036640 GO:0005524|GO:0016021
Vvi2g86 1070 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 207 1069 - -
Vvi2g86 1070 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 115 166 - -
Vvi2g86 1070 ProSitePatterns ABC transporters family signature. 337 351 IPR017871 GO:0005524
Vvi2g86 1070 Pfam ABC transporter 230 364 IPR003439 GO:0005524
Vvi2g86 1070 Pfam ABC transporter 837 985 IPR003439 GO:0005524
Vvi2g86 1070 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 820 1054 IPR003439 GO:0005524
Vvi2g86 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 809 1053 IPR027417 -
Vvi2g86 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 435 IPR027417 -
Vvi2g86 1070 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 515 783 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi2g86 1070 Gene3D - 803 1053 IPR027417 -
Vvi2g86 1070 Gene3D - 188 460 IPR027417 -
Vvi2g86 1070 PANTHER ABC TRANSPORTER C FAMILY MEMBER 10-LIKE 115 166 - -
Vvi2g86 1070 PANTHER ABC TRANSPORTER C FAMILY MEMBER 10-LIKE 207 1069 - -
Vvi2g86 1070 Pfam ABC transporter transmembrane region 504 750 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi2g86 1070 CDD ABC_6TM_ABCC_D2 503 794 IPR044726 GO:0140359
Vvi2g86 1070 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 214 435 IPR003439 GO:0005524
Vvi2g86 1070 SUPERFAMILY ABC transporter transmembrane region 494 802 IPR036640 GO:0005524|GO:0016021
Vvi2g86 1070 SMART AAA_5 239 412 IPR003593 -
Vvi2g86 1070 SMART AAA_5 846 1038 IPR003593 -
Vvi2g86 1070 CDD ABCC_MRP_domain2 818 1038 - -
Vvi2g86 1070 CDD ABCC_MRP_domain1 219 412 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g86 K05666 ABCC2; ATP-binding cassette, subfamily C (CFTR/MRP), member 2 - vvi:100250083 1625.53
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g86 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48