Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g88 ATGGAAAATAGTTTTCTGAAGGACTACCTAGCCACACCCAAAGGAATTTTTTTATACCATTTTGTGCAGGCAAGAAGATACAACATGGGTGAGAGTCTCTGGACTGTTTTCTGTGGAAGTACCGGGTGTTCAAGTAAAATTGGAAAGATAAGCAGTTCTGGGTTCCTAGCCATCATCTGTCCATGTTCATGTCTCAATCATATTTTGGTCATTTCTGTAGACATCATCCTCTTGTTCTTATTATTATTTATCTTCATATATAAAGCATCAGCTTTGAAGATATTATCCCCTCAACGGTCTCTATGCTTTTCCACAACGCTAAATTCTGCAGCCTTTCTTAATGGTAGTTTGGGGTTTGTTTATCTGGGTTTGGGGATCTGGATTTTGGGAGAGAAGCTGATTGAAGAGAACACCATTCTACCTCTGCATGGCTGGCTAGTGAATTTATTACAAGGCTTCGCCTGGTTTTTTCTGGGTTTAGCTATGTTATATCTTTTCCTGGAGCAATTCTATCGATGTTCTCCACTTTTTCAGGACCGAAATATGCAGGAACTGATTCAGAAATTGATGGTGCTGGCTTCTATACACCGTTGCCTGGTGAAGGAGGCAGTGTTACAAACTCTCCTATGGGAAAGTTACAACACAATATCGGCGGTTACTTTCTGGGCATGCTACTTTCTTGGAACTACTCTCTCTGCTACCAATGTTTTCACATTTATGGCAAGTTTACGCCTTGCCCAGGAGCCAATAAGGTTAATCCCTGATATGTGTGATGGGAAGGAGCTGGAGGAATCCATTTTTATCAAGAGCAACAGAATTTCATGGGAGGATAACACTACAAGGGCTACGCTAAGGAACATAACTTTGGTGGTTAAGCCTGGGGAAAAGGTAGCAATTTGTGGAGAGGTTGGCTCAGGTAAATCGACACTATTAGCTGCTGTTCTTGGAGAAGTTCCACACGTTAATGGCATAGTTCGAGTTTATGGAAAGATTGCTTACGTCTCTCAGACAGCATGGATTCCAACAGGTACCATACAAGAAAATATTCTGTTTGGGTCTGCTATGGATCCTTACAGATACAGAGAGGTTATTGAGAAGTGTGCCCTAGTGAAGGACCTTGAGATGCTTCCATTTGGTGATCTCACTGAAATAGGAGAAAGAGGTGTTAATCTGAGTGGTGGACAGAAGCAGAGGGTTCAACTCGCACGCGCATTATATCAGGATGCAGATGTATATCTCCTGGATGATCCATTTAGTGCGGTCGATGCACATACTGCAACCAGTCTATTTAATGAATATGTCATGGGAGCTCTATCAACGAAGACGGTCATACTTGTGACCCACCAAGTGGACTTCCTTCCAGCATTTGATTCGGTTCTGTTAATGTCCGAAGGGGAGATCCTGCAAGCTGCTACCTTTGAGCAACTGATGCGCTTTAGTCAAGAGTTCCAGGACCTTGTTAATGCACACAATGCCACAGTTGGTTCTGAGAGGCAACCTGAGCAAGATTCTACCCAGAAATCTAAAATTCCAAAGGGAGAGATACAGAAGATTTACACCGAGAAACAATTGAGAGACACATCAGGAGAGCAGTTAATTAAGAAAGAAGAAAGAGAAATTGGAGACACTGGTCTCAAGCCTTACCTACAATACTTGAAATACAGCAAGGGATTCTTGTACTTCTTTTTGGCAACTCTATCTCATGTCATATTCATTGTTGGACAGTTGGTGCAAAACTATTGGTTGGCTGCAAATGTCCAGAATTCTAGTGTTAGCCAATTGAAACTGATTGCAGTTTACACAGGGATCGGATTAAGCTTATCACTCTTTTTGTTGCTCCGGTCTTTTTTTGTTGTTCTTTTAGGCCTTGAGGCATCACAATCTATTTTCTCTACACTGCTGAGCTCTCTTTTTCGAGCACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGGGTATCTTCTGATTTGAGTGTGGTTGACCTTGATGTGGCCTTCAAATTTACTTTTGCTGTTGGGGCAGCTATGAATGCTTATGCCAGTTTTGGAGTGTTGGCTATTCTTGCCTGGGAACTTGTGTTTGTCATTTTACCAACAATTTATCTAAGTATACTCATCCAGAGGTACTACTTTGCTGCTGGAAAAGAGTTGATGCGAATCAATGGCACAACCAAGTCTTTTGTTGCAAGCCATCTTTCTGAGTCCATTGCTGGAGCTATGACAATTAGAGCTTTCGGGGACGAAGATAGACACTTTTCAAAGAATTTGGGCTTCATTGACATAAATGCAAGTCCATTCTTCTACAGTTTCACAGCAAATGAGTGGTTGATCCAACGCCTTGAAATACTATGTGCAATCGTTCTCTCATCTTCAGCCCTTGCCCTAACTTTGATTCACACAAGAGCTTCTAAAGCTGGATTTATTGGAATGGCATTGTCATATGGTCTTTCAGTGAATATATTCCTCGTATTTTCTGTCCAAAGCCAGTGCCTTTTAGCAAATATGATTGTTTCTGTTGAAAGATTAGAACAGTTCATGAATATTCCTAGCGAAGCCCCTGCCGTCATAGAGAGCTATCAACCACCACTCAGTTGGCCTGCTATTGGTGAAGTGGAAATTTATGATTTGAAGGTTAAGTATCGGCCCAATGCTCCTCTAGTTCTTCAAGGAATTAGTTGCAAAATTGGAGGAGGACAGAAAATTGGGATTGTTGGCCGGACTGGTAGTGGAAAGACAACACTTATCAGCACTTTGTTTCGCTTGGTAGAGCCTACAGAGGGACAGATAATTATAGATGGCATAAATATTTCCACAATTGGGCTTCATGATCTCAGATCACGTCTTGGGATCATTCCACAAGAACCAACTCTTTTTAGCGGAGCTGTAAGATACAATCTTGACCCTTTATCACTGCATACTGATGAGGAAATATGGGAGGTTCTGGAAAAATGTCAACTTCGAGGGGCTGTTCAAGAGAAAGAAGAGGGTCTGGACTCCTTAGTTGTACAAGACGGATCAAATTGGAGCATGGGCCAGCGACAATTATTCTGTTTGGGACGTGCTCTACTGAGGAGAAGTCGGATACTAGTGCTTGATGAAGCCACTGCATCCATAGACAATGCAACCGACTCCATTCTCCAGAAGACGATAAGGACAGAATTTGCAGACTGCACTGTAATAACAGTAGCCCACAGAATCCCAACCGTGATGGACTGCACAATGGTGCTTGCTATCAGCGATGGAAAATTGGTAGAGTATGATGAGCCAATGAAGCTGATAAAGAAGGAGGGATCGCTGTTTGGCCAGCTTGTCAAGGAGTACTGGTCTCGCTCTTCAAATGGCGGAAACACCTCCGAAGATTGGCTCTGA 3381 42.47 MENSFLKDYLATPKGIFLYHFVQARRYNMGESLWTVFCGSTGCSSKIGKISSSGFLAIICPCSCLNHILVISVDIILLFLLLFIFIYKASALKILSPQRSLCFSTTLNSAAFLNGSLGFVYLGLGIWILGEKLIEENTILPLHGWLVNLLQGFAWFFLGLAMLYLFLEQFYRCSPLFQDRNMQELIQKLMVLASIHRCLVKEAVLQTLLWESYNTISAVTFWACYFLGTTLSATNVFTFMASLRLAQEPIRLIPDMCDGKELEESIFIKSNRISWEDNTTRATLRNITLVVKPGEKVAICGEVGSGKSTLLAAVLGEVPHVNGIVRVYGKIAYVSQTAWIPTGTIQENILFGSAMDPYRYREVIEKCALVKDLEMLPFGDLTEIGERGVNLSGGQKQRVQLARALYQDADVYLLDDPFSAVDAHTATSLFNEYVMGALSTKTVILVTHQVDFLPAFDSVLLMSEGEILQAATFEQLMRFSQEFQDLVNAHNATVGSERQPEQDSTQKSKIPKGEIQKIYTEKQLRDTSGEQLIKKEEREIGDTGLKPYLQYLKYSKGFLYFFLATLSHVIFIVGQLVQNYWLAANVQNSSVSQLKLIAVYTGIGLSLSLFLLLRSFFVVLLGLEASQSIFSTLLSSLFRAPMSFYDSTPLGRILSRVSSDLSVVDLDVAFKFTFAVGAAMNAYASFGVLAILAWELVFVILPTIYLSILIQRYYFAAGKELMRINGTTKSFVASHLSESIAGAMTIRAFGDEDRHFSKNLGFIDINASPFFYSFTANEWLIQRLEILCAIVLSSSALALTLIHTRASKAGFIGMALSYGLSVNIFLVFSVQSQCLLANMIVSVERLEQFMNIPSEAPAVIESYQPPLSWPAIGEVEIYDLKVKYRPNAPLVLQGISCKIGGGQKIGIVGRTGSGKTTLISTLFRLVEPTEGQIIIDGINISTIGLHDLRSRLGIIPQEPTLFSGAVRYNLDPLSLHTDEEIWEVLEKCQLRGAVQEKEEGLDSLVVQDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDSILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGKLVEYDEPMKLIKKEGSLFGQLVKEYWSRSSNGGNTSEDWL* 1127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 899831 914539 - Vvi2g88 Vvi2g88 782787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g88 1126 CDD ABC_6TM_ABCC_D2 557 850 IPR044726 GO:0140359
Vvi2g88 1126 SMART AAA_5 293 466 IPR003593 -
Vvi2g88 1126 SMART AAA_5 901 1093 IPR003593 -
Vvi2g88 1126 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 875 1109 IPR003439 GO:0005524
Vvi2g88 1126 PANTHER ABC TRANSPORTER C FAMILY MEMBER 10-LIKE 207 256 - -
Vvi2g88 1126 PANTHER ABC TRANSPORTER C FAMILY MEMBER 10-LIKE 259 1125 - -
Vvi2g88 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 489 IPR027417 -
Vvi2g88 1126 ProSitePatterns ABC transporters family signature. 391 405 IPR017871 GO:0005524
Vvi2g88 1126 Pfam ABC transporter transmembrane region 558 807 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi2g88 1126 CDD ABCC_MRP_domain1 273 466 - -
Vvi2g88 1126 Gene3D - 256 514 IPR027417 -
Vvi2g88 1126 SUPERFAMILY ABC transporter transmembrane region 550 855 IPR036640 GO:0005524|GO:0016021
Vvi2g88 1126 Pfam ABC transporter 892 1040 IPR003439 GO:0005524
Vvi2g88 1126 Pfam ABC transporter 284 418 IPR003439 GO:0005524
Vvi2g88 1126 Gene3D - 858 1110 IPR027417 -
Vvi2g88 1126 Gene3D ABC transporter type 1, transmembrane domain 522 856 IPR036640 GO:0005524|GO:0016021
Vvi2g88 1126 CDD ABCC_MRP_domain2 873 1093 - -
Vvi2g88 1126 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 268 489 IPR003439 GO:0005524
Vvi2g88 1126 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 569 838 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi2g88 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 866 1102 IPR027417 -
Vvi2g88 1126 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 259 1125 - -
Vvi2g88 1126 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 207 256 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g88 K05666 ABCC2; ATP-binding cassette, subfamily C (CFTR/MRP), member 2 - vvi:100255244 1714.12
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g88 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48