Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g880 ATGGATAAGTATACGATAATCAAGGAAGTTGGTGATGGGACTTTTGGAAGTGTTTGGCGAGCAATAAATAAGCAGACTGGTGAAGTTGTTGCTATAAAAAAGATGAAGAGGAAATATTATTCCTGGGAAGAATGTTTAAATCTGAGAGAAGTCAAGTCATTGAGAAAGATGAACCACCCAAACATTGTGAAGCTCAGGGAAGTCTTTAGGGAAAATGATATTTTGTACTTTGTGTTTGAATACATGGAATGCAACCTTTACCAACTAATGAAAGATCGGTTGAAGCTTTTTTCGGAAACTGAAGTTCGAAATTGGTGCTTTCAAGTGTTCCAAGGTCTTGCTTACATGCACAGGCGTGGATATTTTCATCGCGACCTCAAGCCAGAGAACTTGTTGGTTACAAAAGATGTAATAAAAATTGCTGATTTTGGTCTTGCTCGGGAGATCAATTCTCAACCACCATACACGGAATATGTCTCTACACGCTGGTATCGAGCTCCAGAGGTGCTGCTTCAATCATCCACATATGGTTCTGCAGTTGATATGTGGGCAATGGGTGCTATCATGGCTGAATTGTTTACTCTCCGTCCTCTCTTTCCAGGATCGAGTGAAGCAGATGAAATTTACAAAATATGCAGTGTTATGGGCAGTCCAACTTGGAATTCATGGGCTGAGGGACTTAAACTTGCTAATGCTATCAACTACCAATTCCCACAGTTTTCTAGTATTCATCTCTCTGTATTGATACCATCTGCAAGTGAGGATGCAATCAGCCTTATTACTTCACTTTGTTCATGGGATCCCTGCAAGAGGCCAACAGCCTTGGAGGCTCTTCAGCATCCTTTCTTCCAGAGTTGCTTTTATGTCCCACCATCCCTTCGTCCTCGAACTGCTGTGACTAGGACACCCCCATCTGGTGAAACAAAGGGAGCTTTGGATCAGAAATCTGGTAGGAGGTATTCTAGGGCAACATCTAATTCCAAGCCCACAAGCAATTATTCTTCTGCAAAACCACATGCTGCTTTTGTCACAGGTGTTCAACGCAAGCTGGAAATGAATAATCAGGATGTTTATAAGAATGATAAATCCTTGAAGAGCTCTCCTAAGCAGCCAAGATATCGACCACCAGCAAGGAACAGCCCAACTTCCATTTATGCGGATAGGACTAAGCGTGAAGTTTCAGATGCAGCTGAGAAGCTGGCAAACATGACGGTTGGTTCTGGTAGGAATGGAATGAGGCAATCTCTGCCAGCTCCTATGAAGGCTGGAGGATGGCATGGCCAATCTGACTCTTTTCTTGGCCGGTCCCAAGAGCTTCGACCAGGCAGAGCTGCCTATACGAGGAAAGTTGCTGGATAA 1359 43.41 MDKYTIIKEVGDGTFGSVWRAINKQTGEVVAIKKMKRKYYSWEECLNLREVKSLRKMNHPNIVKLREVFRENDILYFVFEYMECNLYQLMKDRLKLFSETEVRNWCFQVFQGLAYMHRRGYFHRDLKPENLLVTKDVIKIADFGLAREINSQPPYTEYVSTRWYRAPEVLLQSSTYGSAVDMWAMGAIMAELFTLRPLFPGSSEADEIYKICSVMGSPTWNSWAEGLKLANAINYQFPQFSSIHLSVLIPSASEDAISLITSLCSWDPCKRPTALEALQHPFFQSCFYVPPSLRPRTAVTRTPPSGETKGALDQKSGRRYSRATSNSKPTSNYSSAKPHAAFVTGVQRKLEMNNQDVYKNDKSLKSSPKQPRYRPPARNSPTSIYADRTKREVSDAAEKLANMTVGSGRNGMRQSLPAPMKAGGWHGQSDSFLGRSQELRPGRAAYTRKVAG* 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16326974 16335400 + Vvi2g880 Vvi2g880 783579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g880 452 Gene3D Transferase(Phosphotransferase) domain 1 84 289 - -
Vvi2g880 452 PANTHER CYCLIN-DEPENDENT KINASE F-4-LIKE ISOFORM X1 1 400 - -
Vvi2g880 452 Pfam Protein kinase domain 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g880 452 MobiDBLite consensus disorder prediction 297 339 - -
Vvi2g880 452 MobiDBLite consensus disorder prediction 352 391 - -
Vvi2g880 452 SUPERFAMILY Protein kinase-like (PK-like) 1 287 IPR011009 -
Vvi2g880 452 CDD STKc_MAK_like 4 283 - -
Vvi2g880 452 ProSitePatterns Protein kinases ATP-binding region signature. 10 34 IPR017441 GO:0005524
Vvi2g880 452 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 400 - -
Vvi2g880 452 ProSiteProfiles Protein kinase domain profile. 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g880 452 SMART serkin_6 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g880 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Vvi2g880 452 MobiDBLite consensus disorder prediction 354 368 - -
Vvi2g880 452 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Vvi2g880 452 MobiDBLite consensus disorder prediction 318 338 - -
Vvi2g880 452 MobiDBLite consensus disorder prediction 405 452 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g880 K08829 MAK; male germ cell-associated kinase [EC:2.7.11.22] - vvi:104882706 923.694
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g880 . . . . . . Bma07g00966 Bma14g00111 Cmo06g00611 Cmo16g00575 . . . . . Cpe14g00445 . . . . . . . . Cla10g00110 Cam10g0105 Cec10g0114 Cco10g0115 Clacu10g0111 Cmu10g0958 Cre10g0368 . . . . Lsi07g01139 . . Cme06g02415 Blo03g00840 . Bda07g00139 . Bpe08g01075 . . . . . . Cma06g00604 Cma16g00526 Car06g00539 Car16g01140 . . . . . . . . . . . . . . . . . Csa03g00109 Chy06g02196 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005380 1 2 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76549 PF00069 Pkinase 8.10E-77 CL0016 Vvi PK