Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g884 ATGGCTGAAGAAGCTGATAAAGACCAGGGAAATGGGCAGAGTTCATCGGCTGCCGAGAAGGACACAGGAGTCCAAAAGAAGAAGCGGAGAGGAATCATATCTCGCATTTGGAATGGCCTATTTAGAAGACATGGTGATGATTTTGAGAAAAGGCTGCAACACATTTCCAAGGAAGAAGCTTCTGTTCTAGCTAGGATGAAGAGGAGATCTCAAAGTTCGAGGACAATGACAAGGAATCTCATAGTACTGTCAGTGATTTTGGAGGTTATTGCAGTGGGTTATGCTATCATGACAACAAGATCCGTAGATCTGAACTGGAAGATGAGGGCTTTTCGTGTTCTGCCAATGTTTCTGTTGCCTGGTTTGTCTTCTGCTGCTTATTCAGTGATTGTAAGCCTCACAAGAATGTGTGACCGCAGGGATCAGAAAACTCTAGAGCGCCTTCGAGCCGAAAGACGAGCAAAAATTGATGAACTCAAAGAGAGGACAAATTATTATACCACACAACAGCTCATTCAGAGATATGACACTGATCCAGCAGCAAAGGCTGCTGCTGCAACTGTCCTGGCATCAAAGTTGGGTGCAGAGTCAGGCTTAAAAGTGTTTGTCGGTGATGAATCTCAGCTTGATGTTGCAACAGCGAAGAGCAATGATGTAGAATTAACACAATCTAGTGGGCTGCGAAATAGAAAACAGTTGCAAACCAGATCCGGTAATCCAGCTAATCCCACAATGCATCCCTCTGAGGGGGAAATGCCCCATCAAGCAGGGGTCGAGGGTACTGGAACTTCTGGGCATGATCAGTTGGTTGTGGAGCATTACCCTCATCAAGGGGTGGCCCGATATGATGGGGGATGGATTGCTCGAATTGCAGCATTGCTTGTGGGTGAGGATCCAACACAGTCATATGCGCTCATATGCGGGAACTGCCATATGCACAATGGCCTTGCCCGGAAGGAGGATTTCGCCTACATAACCTACTATTGTCCACACTGCAATGCCCTGAATCGGTCACTGCAACAGGAAGAGCATGCGTCTGGCTCCAAGTCCCCAGGGGCGGTGAATCTGTCACAGCAACTGGAAGAGCATGCTTCTGCCTCCAAGTCCCCAGGGGCAGTGAATCGGTCACAGCAACTGGAAGAGCATGCTACTGGCTCCAAGTCCCCAGGGGCGGGCAGTGCTGATGCAGTCAACAATGCTGCCGGTCCTGTGACTGATAGCGGGAGGACAAGCAGCAGCCCAGTAAGAGCTGCATCAGAGATTGAGCAAGTAACTGAGAAGGCAGATTAG 1290 48.91 MAEEADKDQGNGQSSSAAEKDTGVQKKKRRGIISRIWNGLFRRHGDDFEKRLQHISKEEASVLARMKRRSQSSRTMTRNLIVLSVILEVIAVGYAIMTTRSVDLNWKMRAFRVLPMFLLPGLSSAAYSVIVSLTRMCDRRDQKTLERLRAERRAKIDELKERTNYYTTQQLIQRYDTDPAAKAAAATVLASKLGAESGLKVFVGDESQLDVATAKSNDVELTQSSGLRNRKQLQTRSGNPANPTMHPSEGEMPHQAGVEGTGTSGHDQLVVEHYPHQGVARYDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDFAYITYYCPHCNALNRSLQQEEHASGSKSPGAVNLSQQLEEHASASKSPGAVNRSQQLEEHATGSKSPGAGSADAVNNAAGPVTDSGRTSSSPVRAASEIEQVTEKAD* 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16490274 16499446 - Vvi2g884 Vvi2g884 783583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g884 429 MobiDBLite consensus disorder prediction 216 266 - -
Vvi2g884 429 MobiDBLite consensus disorder prediction 359 429 - -
Vvi2g884 429 MobiDBLite consensus disorder prediction 1 26 - -
Vvi2g884 429 Coils Coil 142 162 - -
Vvi2g884 429 MobiDBLite consensus disorder prediction 359 384 - -
Vvi2g884 429 MobiDBLite consensus disorder prediction 403 419 - -
Vvi2g884 429 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 286 336 IPR019273 -
Vvi2g884 429 PANTHER INTEGRAL MEMBRANE METAL-BINDING FAMILY PROTEIN (DUF2296) 14 363 - -
Vvi2g884 429 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 14 363 IPR040115 GO:0071786
Vvi2g884 429 MobiDBLite consensus disorder prediction 216 244 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g884 K23292 LNPK; endoplasmic reticulum junction formation protein lunapark - vvi:100256174 838.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g884 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .