Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g886 ATGGGCGTTAATCTGACCGAAGGCGCCATCTCGATGCTTTGCAGCGGCGACGCGCAAGGGTCCGATGTGAAGCCGGTGCTGCAAGTGGCGGACATCAGATTGGTGAATACTCAGCAGCAGAGCAACAGCAACGAAAGGTTTCGGATACTGCTGTCGGATGGGTGCCATCTGCAGCAGGGGATGCTGGCGACGCAGAGGAACGAGTTGGTGAAATCCGGGAGGTTGCAGAAGGGGTCGGTTGTTCAGTTGACTCAGTTTGTCTGCAACGTCATCAAGGATCGCATGATTATTATTATCATTGATTTGGATGTGATACTTGAAAAGTGTGATCCTATTGGGGAACCAAAACAATATGTGCAAGGTGGAACTGCTGGTGTTCACTCACTGGTGGCTCTGCTGCTAAACCAAATATGGCTGGGCCTCAGTCTGCATATCAGCAGCCACCTCCAATTTACTGCAAAGGGAGAACTTCGGCACTATAATAATCCTCGGGGTGATGGCAAAGTATTCTCTTTTGATCTTCTGGACTCGGATGGTGGAGAAATTAGGGTAACATGTTTCAATGCTGTGGCTGATCAATTCTACAATCAGATTGAAACTGGTAAAGTGTATTTAATTTCCAAGGGGAGCCTGAAACCTGCTCAAAAAACTTTCAATCACCTTCGCAATGATCATGAGATATTCTTAGAGAGTACATCAACAATCCAGCCTTGCTTTGATGATGACAACTCAATCCCGAGGCAACAATTTCACTTCCGGTCCATCAGTGATGTTGAAAGCATGGAGAACAACAGTGTTGTGGATGTAATTGGTGTGGTCTCTTTTATCAGTCCCTCTGCTTCCATAATGAGGAAAAATGGTACTGAAACTCAGAAGAGAGCCCTCCATTTGAAGGACATGTCTGGCCGAAGTGTTGAATTAACTCTATGGGGAAATTTCTGCAATGCGGAAGGACAAAGGCTGCAAAATATGTTGGGGACTATTTCTACCAGCCAACTGTTCATAGAGCCAGATTTTCCAGAGGCTCGCAAGCTTAAAGAATGGTTTGACAAGGAAGGGAGGAACACCCCTTCTGTCTCTATTTCCAGAGAAGTAACAAGTATGGGCAGAACAGATGTTCGAAAGACTATTTCTCAAATCAAAGATGAGAGGCTAGGGACTTCAGAAAAGCCAGATTGGATTACTGTCTGTGCAACTGTTTCTTTCATAAAAGTTGATAATTTTTGCTATACAGCATGCCCCATTATGATTGGTGATCGTCAATGCAACAAGAAGGTTACGAACAATGGAGATGGGAAATGGCGATGTGAGAGGTGTGATCAGTCTGTTGATGATTGTGACTACAGGTATATTCTTCAGTTCCAGATACAGGACCATACTGGCTTGACATGGGTAACTGCATTCCAGGAATGCGAACAAGATGATGAAAAATTTGGAGAAATCCTACGCGGGGTTCTTTTTACTAAATATTCATTCAAATTGAAAGTGAAGGAGGAGATATTCAGTGATGAACAACGTGTGAAGTCTACTGTTGTCAAAGCAGAGAAGGTAAATTTCTCTTCTGAGTCCCGGTTTCTTTTGGATATGGTGGAGAAGCATAAAGTAGAAGACTCCACTTTTCCCCTCAAATCAGAAAATGTTATTTCCAATGGGGGAATGACTAATCCTGGACTTGGGAATGTTGGAATTAGACAGTCCACACCATCTGTTAACTATTCTGGAAATGCTAGCAATGCTGGTAGAGATTTTGGGTTCCCGGCAAACCAAGGGGTTCAGCATGGGAACCAATATGGTAGCTCTGGTCTTTCTGCAACTGGTTCAACTGGTATGTATCAGAGTTGCAACAGCTGTGGTGGTACTGGCCATAGCTCTTCAAACTGCCCTAGTGTCATGCACTCCCCGAGACAGTCATCAGGAGGGGGCTATGTCAGCAGGGCATCCACTGGCCCAAGTGCTGGAGGCACGACTGGTGAGTGCTATAAATGCCATCAATTCGGACACTGGGCAAGGGACTGTCCTGGTTTGAACACTGGTCCTCCAGCTTATGGAAGCAGTGGTGTCAACTCAGGGACGTTAATAACAACCGTTGGCAACAGACGCTGCTGTATCAAAAGTGAAGGCAGGAAGCTGATCTCTCTCTCTCTCTCATGCCTCTGGGGATGGGAAGTTTGGAAGCAGAAACACACATTGGCTGAGGAAGAACCAGGCCCAGAAGCCCCCTTGATAGCCAGAGGATCCCACATTGTCCCTTCTGCGCCACAATGA 2265 45.83 MGVNLTEGAISMLCSGDAQGSDVKPVLQVADIRLVNTQQQSNSNERFRILLSDGCHLQQGMLATQRNELVKSGRLQKGSVVQLTQFVCNVIKDRMIIIIIDLDVILEKCDPIGEPKQYVQGGTAGVHSLVALLLNQIWLGLSLHISSHLQFTAKGELRHYNNPRGDGKVFSFDLLDSDGGEIRVTCFNAVADQFYNQIETGKVYLISKGSLKPAQKTFNHLRNDHEIFLESTSTIQPCFDDDNSIPRQQFHFRSISDVESMENNSVVDVIGVVSFISPSASIMRKNGTETQKRALHLKDMSGRSVELTLWGNFCNAEGQRLQNMLGTISTSQLFIEPDFPEARKLKEWFDKEGRNTPSVSISREVTSMGRTDVRKTISQIKDERLGTSEKPDWITVCATVSFIKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCERCDQSVDDCDYRYILQFQIQDHTGLTWVTAFQECEQDDEKFGEILRGVLFTKYSFKLKVKEEIFSDEQRVKSTVVKAEKVNFSSESRFLLDMVEKHKVEDSTFPLKSENVISNGGMTNPGLGNVGIRQSTPSVNYSGNASNAGRDFGFPANQGVQHGNQYGSSGLSATGSTGMYQSCNSCGGTGHSSSNCPSVMHSPRQSSGGGYVSRASTGPSAGGTTGECYKCHQFGHWARDCPGLNTGPPAYGSSGVNSGTLITTVGNRRCCIKSEGRKLISLSLSCLWGWEVWKQKHTLAEEEPGPEAPLIARGSHIVPSAPQ* 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16542490 16552676 - Vvi2g886 Vvi2g886 783585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g886 754 SUPERFAMILY Nucleic acid-binding proteins 250 356 IPR012340 -
Vvi2g886 754 Gene3D - 3 119 IPR012340 -
Vvi2g886 754 ProSiteProfiles Zinc finger CCHC-type profile. 659 673 IPR001878 GO:0003676|GO:0008270
Vvi2g886 754 MobiDBLite consensus disorder prediction 625 649 - -
Vvi2g886 754 Pfam Replication factor-A protein 1, N-terminal domain 5 106 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vvi2g886 754 PANTHER REPLICATION PROTEIN A SUBUNIT 149 572 - -
Vvi2g886 754 PANTHER REPLICATION PROTEIN A SUBUNIT 3 114 - -
Vvi2g886 754 CDD RPA1_DBD_A 152 237 - -
Vvi2g886 754 Gene3D - 248 356 IPR012340 -
Vvi2g886 754 Pfam Replication protein A OB domain 255 322 IPR031657 -
Vvi2g886 754 SUPERFAMILY Retrovirus zinc finger-like domains 646 678 IPR036875 GO:0003676|GO:0008270
Vvi2g886 754 Pfam OB-fold nucleic acid binding domain 154 217 IPR004365 GO:0003676
Vvi2g886 754 Gene3D - 358 533 IPR012340 -
Vvi2g886 754 CDD RPA1_DBD_B 266 350 - -
Vvi2g886 754 SUPERFAMILY Nucleic acid-binding proteins 153 245 IPR012340 -
Vvi2g886 754 MobiDBLite consensus disorder prediction 733 754 - -
Vvi2g886 754 ProSiteProfiles Zinc finger CCHC-type profile. 614 629 IPR001878 GO:0003676|GO:0008270
Vvi2g886 754 Gene3D - 145 241 IPR012340 -
Vvi2g886 754 Pfam Zinc knuckle 613 629 IPR001878 GO:0003676|GO:0008270
Vvi2g886 754 Pfam Zinc knuckle 658 673 IPR001878 GO:0003676|GO:0008270
Vvi2g886 754 PANTHER REPLICATION FACTOR A 1, RFA1 3 114 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi2g886 754 PANTHER REPLICATION FACTOR A 1, RFA1 149 572 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi2g886 754 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 151 532 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi2g886 754 SUPERFAMILY Nucleic acid-binding proteins 374 533 IPR012340 -
Vvi2g886 754 Gene3D - 611 678 - -
Vvi2g886 754 CDD RPA1N 8 94 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vvi2g886 754 Pfam Replication factor-A C terminal domain 393 526 IPR013955 -
Vvi2g886 754 CDD RPA1_DBD_C 377 532 IPR013955 -
Vvi2g886 754 SMART c2hcfinal6 613 629 IPR001878 GO:0003676|GO:0008270
Vvi2g886 754 SMART c2hcfinal6 658 674 IPR001878 GO:0003676|GO:0008270
Vvi2g886 754 SUPERFAMILY Nucleic acid-binding proteins 1 113 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g886 K07466 RFA1, RPA1, rpa; replication factor A1 - vvi:100263039 1074.31
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g886 . . . . . Bpe07g00251 . . Cmo06g00609 Cmo16g01260 . . . . . Cpe14g01003 . . . . . . . . Cla10g00108 Cam10g0103 Cec10g0110 Cco10g0112 Clacu10g0107 Cmu10g0955 Cre10g0366 . . . . Lsi07g01137 . . Cme06g02413 . . . . . . . Bma12g00253 . . . Cma06g00602 Cma16g01216 Car06g00537 Car16g01142 . . . . . . . . . . . . . . . . . Csa03g00107 Chy06g02198 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008728 0 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35