Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g891 ATGAATTCTTCACTGCCCAAGCTCCTCAAACACGTCTTTTCCATCCACAATTTCCGTTGCTCGTACTCTTCTTTCTCTGTGACTGTGGTTCACCAAATCGCAAAGGCGTTTCACCACAACAACTTCAGTTTCTTCAACTCTGGTTCACTTCCAAATCTACAGCCCGCCCACCTTGAACCAGTCGTCTTCCAACTCCGCTCCAACCCCACCTCCGCCCTCCGGTTCTTTGAATGGGCTGAGAATTTTCTGGGTCTGTGCCACCCGGTTCAGTCCTTCTGTGGCATTGCCCATGTGCTGCTCCGGCACCGAATGTTTGATCCGGCAACGCGGGTTTTTGACCGAATGGTCGGGCAATTCGGGAATTTGGAGGTTTTGGGTGAGTTTCATGGCAGTTTTCGGAATTATGGTTCGAACCCGAGTACAGTTTATAGCTTTTTGTTGCATTGTTATTGTAGGAATGGCATGGTTGATAGGGCTGTTGATACTTTTGCTTGGATGTCTAAGATGGGAGTTTCAATTTCGCATTATGCGGCATCAGAAATGTTGGATTTATTGATTGATTCAGATCGCATAGATGTTATTCTTGAAAATTATGAAGAGATGTGTAAAGGCTTAGGTGTCTATGAGTTTGTTTTCAACAGTTTTCTCAAGAGGGGTGAGGTTGAAAAGGGGTTGAATTTTCATCGGGCATTGGTCGAAAGAGGCTTAGTTCCCAAGATAGTTGATTGTAATAAGATCTTGAAAGGCCTTTGCATGGGAAATCAGATAGGCGTTGCTTCGGATTTCTTTGATATGATGGTAAGGAGTGGTCCAAGCCCAAATTTGGTGACATTTAGCACGTTGATTAATGTGTATTGTAAGGAGTTGAGATTGGATGAGGCATTTAGTCTTTATAATCTTATGATTGAGAAGGGCATAGTTCCAGATTTGGTTATTTATAGCATTTTAATTAATGGTCTTTTCAGGGCAGGAAAGTTGGAGGAGGGAAATTCTCTTTTCTCCATGGCTTTAGCTAGAGGTGTTAAGATGGATGTGGTGATTTTCAGTTCAATTATGGATGCATATGTGAGGGTTGGAGATTTGGGAAAGGCAATTGAGGTATATACAAGAATGTTGAAGGAAGGGATCTCTCCAAATGTGGTTACTTACAGCATTCTTATAAATGGGTTATGTCGAAATGGTCGTGTCCTAGAGGCTTGTGGGGTCTTTGGTCAGATTTTGAAACAGGGTTTAGAACCGTCAGTGTTGACTTATAGTAGTCTCATTGATGGCTTTTGCAAATCTGAAAATTTGAGAGATGGGTTTGGTCTGTATGGGATTATGCTAAGGAAGGGCCACGTTCCTGATGTTGTTGTCTGTAGTATGCTTATAAATGGTCTTAGCCGACAAGGGATGATGGATGAGGCTCTCAGGTTTTTCTTCCAAGCTGTGAAAAGGGGTTTAACACTCAATAACTATTTGTTTAATGCCTTAATTGATGGTTGTTTTAGATTGAAACGAACAAGGGATGGTCTGAAGATGTACATCCTCATGGGCATGTATAAAGTAATCCCAGATGTAGTTACTTACACTGTGCTTGTTAAAGGGCTTGCTGAGCAAGGGAGATTGGATGAGGCATTGGCATTGTTCTTCCAATTGCTGAAGAAGGGGTTTTCACCAGATCATATAATCTATTGCACTCTCATTGATGGATTCTGCAAGAAAAGGGATCCAGCAACTGGATTACAGATTTTCAAGCTGATGCAAAGCAATGGAATATTTCCAGATATTTGCATTTATAATGTTCTCATTAATATGTTTTTCAGGGAAGGCTGTGTGGAGAATGTGCTGGAATTATTGAGGGAAATCATTAAGTATGGGTTAGAACCCGATATTGTGACATACAACACAATGATATGTGGTTACTGCTCTTTGAAAATATTTTCCAAGGCCATTAAACTTTTTGAAGTTCTGAAATGTGGACGGACCCAGCCAAATGCTATTACTTTTACCATTTTGATTGATGCTTACTGTAAGGATGGTAGAATGGACGATGCAATGTTGATATTCTCCTCTATGCTGGAAAGGGGTCCTGAACCTAACATATTAACATATAGTTGTTTAATTGATGGCTATTTTAAAACTGAAAATACAGAGAGTGCCTTTGAGCTTTATGAAAAGATGCTTGGTGACAGAGTCTCTCCAAACATTGTGAGTTATAGCATCCTCATTGATGGTCTTTGCAAAAAGGGGCTAATGGAGGAAGCATCACTTGCCTTTCAATGTGCTATAGGCAGGCATTTGTTGCCTGATGTAATAGCCTATGGGATTCTGATACGTGGTTACTGCAAGGTTGGAAGATTAGCTGAAGCCATGATGTTGTATGATCATATGTTGGTAAATGGCATCATGCCAGATGATCTTTTGCAAAAAGCACTTGCAGAGTATGGTTTTCAAGATAGTCAGGCAAAAAATTGTGTACTCAACTGA 2469 40.75 MNSSLPKLLKHVFSIHNFRCSYSSFSVTVVHQIAKAFHHNNFSFFNSGSLPNLQPAHLEPVVFQLRSNPTSALRFFEWAENFLGLCHPVQSFCGIAHVLLRHRMFDPATRVFDRMVGQFGNLEVLGEFHGSFRNYGSNPSTVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYEEMCKGLGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPDDLLQKALAEYGFQDSQAKNCVLN* 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16654145 16656614 - Vvi2g891 Vvi2g891 783590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g891 822 PANTHER REPEAT-LIKE SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 25 819 - -
Vvi2g891 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Vvi2g891 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Vvi2g891 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Vvi2g891 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 694 728 IPR002885 -
Vvi2g891 822 SUPERFAMILY HCP-like 591 792 - -
Vvi2g891 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Vvi2g891 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 484 518 IPR002885 -
Vvi2g891 822 Pfam PPR repeat family 518 567 IPR002885 -
Vvi2g891 822 Pfam PPR repeat family 344 392 IPR002885 -
Vvi2g891 822 Pfam PPR repeat family 693 742 IPR002885 -
Vvi2g891 822 Pfam PPR repeat family 623 672 IPR002885 -
Vvi2g891 822 Pfam PPR repeat family 273 321 IPR002885 -
Vvi2g891 822 Pfam PPR repeat family 413 461 IPR002885 -
Vvi2g891 822 Gene3D Tetratricopeptide repeat domain 457 616 IPR011990 GO:0005515
Vvi2g891 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Vvi2g891 822 TIGRFAM PPR: pentatricopeptide repeat domain 276 309 IPR002885 -
Vvi2g891 822 TIGRFAM PPR: pentatricopeptide repeat domain 592 625 IPR002885 -
Vvi2g891 822 TIGRFAM PPR: pentatricopeptide repeat domain 142 173 IPR002885 -
Vvi2g891 822 TIGRFAM PPR: pentatricopeptide repeat domain 487 520 IPR002885 -
Vvi2g891 822 TIGRFAM PPR: pentatricopeptide repeat domain 521 554 IPR002885 -
Vvi2g891 822 TIGRFAM PPR: pentatricopeptide repeat domain 311 345 IPR002885 -
Vvi2g891 822 TIGRFAM PPR: pentatricopeptide repeat domain 451 484 IPR002885 -
Vvi2g891 822 TIGRFAM PPR: pentatricopeptide repeat domain 626 659 IPR002885 -
Vvi2g891 822 TIGRFAM PPR: pentatricopeptide repeat domain 731 753 IPR002885 -
Vvi2g891 822 TIGRFAM PPR: pentatricopeptide repeat domain 697 730 IPR002885 -
Vvi2g891 822 TIGRFAM PPR: pentatricopeptide repeat domain 767 799 IPR002885 -
Vvi2g891 822 TIGRFAM PPR: pentatricopeptide repeat domain 346 380 IPR002885 -
Vvi2g891 822 TIGRFAM PPR: pentatricopeptide repeat domain 381 415 IPR002885 -
Vvi2g891 822 TIGRFAM PPR: pentatricopeptide repeat domain 243 274 IPR002885 -
Vvi2g891 822 TIGRFAM PPR: pentatricopeptide repeat domain 661 694 IPR002885 -
Vvi2g891 822 TIGRFAM PPR: pentatricopeptide repeat domain 417 450 IPR002885 -
Vvi2g891 822 TIGRFAM PPR: pentatricopeptide repeat domain 557 590 IPR002885 -
Vvi2g891 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 729 763 IPR002885 -
Vvi2g891 822 PANTHER ATPASE EXPRESSION PROTEIN 3 25 819 - -
Vvi2g891 822 SUPERFAMILY TPR-like 96 409 IPR011990 GO:0005515
Vvi2g891 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 659 693 IPR002885 -
Vvi2g891 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 554 588 IPR002885 -
Vvi2g891 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Vvi2g891 822 Pfam PPR repeat 760 791 IPR002885 -
Vvi2g891 822 Gene3D Tetratricopeptide repeat domain 686 753 IPR011990 GO:0005515
Vvi2g891 822 Gene3D Tetratricopeptide repeat domain 617 685 IPR011990 GO:0005515
Vvi2g891 822 Gene3D Tetratricopeptide repeat domain 754 806 IPR011990 GO:0005515
Vvi2g891 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Vvi2g891 822 Gene3D Tetratricopeptide repeat domain 326 433 IPR011990 GO:0005515
Vvi2g891 822 Gene3D Tetratricopeptide repeat domain 206 325 IPR011990 GO:0005515
Vvi2g891 822 Gene3D Tetratricopeptide repeat domain 62 192 IPR011990 GO:0005515
Vvi2g891 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 589 623 IPR002885 -
Vvi2g891 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 764 798 IPR002885 -
Vvi2g891 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 519 553 IPR002885 -
Vvi2g891 822 Pfam PPR repeat 592 621 IPR002885 -
Vvi2g891 822 Pfam PPR repeat 487 511 IPR002885 -
Vvi2g891 822 Pfam PPR repeat 142 170 IPR002885 -
Vvi2g891 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 624 658 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g891 - - - vvi:104882747 1639.01
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g891 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029892 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1