Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g892 ATGCAGTTGTGGCGATTTATCAAACTTTCTTCATATTTATGTGCTTCTTCTACCATACCTTCACGCTTCCAAATTGGTAATACTGTGACTCCACTTCTACATCTGCAACTGCAATCAATAGACCGTTATCGAGCTTTCCACATTGGTCCTAGAAATGGGTTTGAGGAAAGTTCAAATTCAAGTTCAGGTTCAAGCCCCAATTTGGTGAAAGGAGCTTTTGATCTTATTGGTAGAAATGGGTTTGAAGGAATTTCAAATTCGAGGCCAGATTCAAGCTCCAATTTAGTGAAAGGATCTTTTGATATTGTTAGTAGCAATGGGGAGGAAAGTTCAAAATCAACTTCAACTTTGGGGAATAGGGCTTTTGATCTCATTAGTGGAAATGGGGTTGAGGGAAGTTCGAATTCCATTTCAAATTCTGCCAACCCAGCATTTGATTTTGTTGGCAGAAAAGGGGTTGAGGAAAGTTTAGAAGATGGTGTTGAGGAAAGTTCAGAAAAGGGTGTGGGTGAAAGTCCGAGTTTGGCAGACCGAGCTTATTTTGATGGTATTAGTACAAATGGGGTTGAGGAAAGTTTAAATCCTGAACACAGGGCTCTTGATGTTGTTACTAGAAATGGGGTTGAAGAGAGTTTGATTTCGGTAAACCAAACCTTTGATCTTGTTGGTGGAAATGATGTTGAGGAAAGAGTTTTAGTCAGTGATGCTGATAAATTATACAAAGCTATTGCCAATAATGCAAATCCTGAGAGTGACATGGAAAAAGCACTTGACCTGGTTGGCGTAGAGCTTACAACTGACTTGGTGATTGAGATACTAGGTAAGATTCATTTTGAGGAGAAAATGGCTTTTAGGTTCTTTATGTGGGCAGGTCATCAAGACTGTTATTCGCATGAGCCCCGAGCATACAATGAAATGATTGACATATTATCCAGCACAAAGTACAAGGTGAAGCAGTTTCGGATTGTTTGTGATATGCTTGATTATATGAAGAGAAATGACAAGAAGTCAGTTCCAGTTGAGGTTTTGTTGATGATTTTGAGGAAATACACAGAAAAGCATTTGGCCCATCTTCATAAATTTGCAAAGAAGAAGAAAATAAGGGTGAAGACCCAACCAGAAATTAATGCCTTGAACTTGCTGCTTGATGCTTTGTGCAAAAACCCTAGTAGAGGAATGAGGGTTTTGGAAGAAATGATTGAAATGGGTCATACACCAGATAGTTTTACTTACAATACTGCAATTGATTCCTTTTGCAAAGCAGGGATGGTGACAGAGGCAACTGAACTCTTTGAGTTCATGAGAACAAAGGGTTCAACCATGTCTTCTCCTACTGCAAAAACATATGCAATCATGATTTTGGCTCTTGTACAGAGTGATAGAACTGAGGAGTGCTTTAAACTTATTAAAGATATGATAAACAGTGGTGTCCTTCCGGATGTTTCGACGTACAAGCAAGTGATTGAAGGGATGTGTTTGGCTGGAAAGGTTGAGGAAGCTTACAAGTTCTTGGAAGAGATGGGAAATAAAGGGTATCGTCCTGATATTGTTACTTATAATTGTTTTCTTGATGTACTATGTGAAAATAAAAAGAGCGAGGAAGCACTTGGGCTTTATGGCAGGATGATTGAGGCTGGGTGTGTGCCTAGTGTGCATACTTTCAATATGCTGATTTCAATGTTTTTTGAGATTGGTGAACCTGATGGGGCATTTGAGACGTGGCATGAGATGGATAAGAGGGGATGTGCACGGGATACTGACACTTACTGTGTGATGATTGAAGGGCTTTTTAATTGCAATAAAATGGAAGATGCATGTTTTCTCTTAGATGAGGTTGTAAACAAGGGAATAAAATTGCCATATCGGAAATTTGACTGCTTTTTGATGCAGCTTTCAATGATTGGTGATCTCCAAGCCATCCATAAGCTTTCAGAGCATATGAGAAAATTCTATAACCCTGCTATGGCAAGACGTTTTGCACTGAATCAGAAGCGGAGGAGCATGAGTTTAAGAGGAAAGTAA 2022 39.32 MQLWRFIKLSSYLCASSTIPSRFQIGNTVTPLLHLQLQSIDRYRAFHIGPRNGFEESSNSSSGSSPNLVKGAFDLIGRNGFEGISNSRPDSSSNLVKGSFDIVSSNGEESSKSTSTLGNRAFDLISGNGVEGSSNSISNSANPAFDFVGRKGVEESLEDGVEESSEKGVGESPSLADRAYFDGISTNGVEESLNPEHRALDVVTRNGVEESLISVNQTFDLVGGNDVEERVLVSDADKLYKAIANNANPESDMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGHQDCYSHEPRAYNEMIDILSSTKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKYTEKHLAHLHKFAKKKKIRVKTQPEINALNLLLDALCKNPSRGMRVLEEMIEMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDACFLLDEVVNKGIKLPYRKFDCFLMQLSMIGDLQAIHKLSEHMRKFYNPAMARRFALNQKRRSMSLRGK* 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16675911 16678634 + Vvi2g892 Vvi2g892 783591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g892 673 Pfam PPR repeat 588 617 IPR002885 -
Vvi2g892 673 PANTHER OS02G0759500 PROTEIN 224 387 - -
Vvi2g892 673 PANTHER OS02G0759500 PROTEIN 387 673 - -
Vvi2g892 673 Pfam PPR repeat family 514 561 IPR002885 -
Vvi2g892 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Vvi2g892 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 585 619 IPR002885 -
Vvi2g892 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 479 IPR002885 -
Vvi2g892 673 Pfam PPR repeat 402 435 IPR002885 -
Vvi2g892 673 Pfam PPR repeat 476 507 IPR002885 -
Vvi2g892 673 Gene3D Tetratricopeptide repeat domain 510 577 IPR011990 GO:0005515
Vvi2g892 673 Gene3D Tetratricopeptide repeat domain 235 437 IPR011990 GO:0005515
Vvi2g892 673 Gene3D Tetratricopeptide repeat domain 438 509 IPR011990 GO:0005515
Vvi2g892 673 Gene3D Tetratricopeptide repeat domain 578 651 IPR011990 GO:0005515
Vvi2g892 673 TIGRFAM PPR: pentatricopeptide repeat domain 517 551 IPR002885 -
Vvi2g892 673 TIGRFAM PPR: pentatricopeptide repeat domain 448 481 IPR002885 -
Vvi2g892 673 TIGRFAM PPR: pentatricopeptide repeat domain 588 618 IPR002885 -
Vvi2g892 673 TIGRFAM PPR: pentatricopeptide repeat domain 552 585 IPR002885 -
Vvi2g892 673 TIGRFAM PPR: pentatricopeptide repeat domain 409 439 IPR002885 -
Vvi2g892 673 TIGRFAM PPR: pentatricopeptide repeat domain 483 516 IPR002885 -
Vvi2g892 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Vvi2g892 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Vvi2g892 673 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 224 387 - -
Vvi2g892 673 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 387 673 - -
Vvi2g892 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 550 584 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g892 - - - vvi:100259722 1268.83
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g892 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005463 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 7 1 1 40