Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g894 ATGGGGAAGGAAAGAAACTCAGAAATTGAAGATATTCACAACGCAGCCAGATCCGGTGACCTTCTAAAACTTCAATCCATTTGCAGTTCCAATCCTTTAGCAGTCAATTCCAGAGATAAGCACTCCAGAACCCCACTACATTTAGCCGCATGGGCTGGGCAGACACAGGTGGTAACCTATCTCTGCAAGCACAAGGCTGATGTTGGTGCTGCAGCGATGGACGACATGGGTGCAATTCACTTTGCTGCCCAGAAAGGACATCTAGAAGTCGTCCGCACTCTGCTTTCATCTGGGGCCTCAGTCAAAGCTATCACCCGCAAGGGCATGACCCCACTTCACTACGCAGCTCAAGGATCCCATCTCGATCTTGCCAAGTACTTGGTAAGGAAAGGCGGTAGTCTCAGTGCCAAGTCAAAAGCAGGAAAAACCCCTCTTGATCTTGCAGGCAGTGAAGAATTCCGCACTGTTTTGGTAGAATGTGAGAGGTTATCTAGGAAAGGAGATAAGAATGTTAAAGACAAACTGATGAAGATGGTGAAGTACAAGAGGACACGGATGTCAAGAGGAAAGCTGATGAAGATGGCACCAAGGAAGAAGCCTCGAAGGTACCGAAAAAGGCCAGAGTTGCTCTTAATCATCTTCTAA 645 47.44 MGKERNSEIEDIHNAARSGDLLKLQSICSSNPLAVNSRDKHSRTPLHLAAWAGQTQVVTYLCKHKADVGAAAMDDMGAIHFAAQKGHLEVVRTLLSSGASVKAITRKGMTPLHYAAQGSHLDLAKYLVRKGGSLSAKSKAGKTPLDLAGSEEFRTVLVECERLSRKGDKNVKDKLMKMVKYKRTRMSRGKLMKMAPRKKPRRYRKRPELLLIIF* 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16688397 16693728 - Vvi2g894 Vvi2g894 783593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g894 214 PRINTS Ankyrin repeat signature 42 57 IPR002110 GO:0005515
Vvi2g894 214 PRINTS Ankyrin repeat signature 90 104 IPR002110 GO:0005515
Vvi2g894 214 PANTHER ANKYRIN REPEAT PROTEIN 6 171 - -
Vvi2g894 214 SMART ANK_2a 74 103 IPR002110 GO:0005515
Vvi2g894 214 SMART ANK_2a 41 70 IPR002110 GO:0005515
Vvi2g894 214 SMART ANK_2a 107 136 IPR002110 GO:0005515
Vvi2g894 214 ProSiteProfiles Ankyrin repeat region circular profile. 107 139 - -
Vvi2g894 214 ProSiteProfiles Ankyrin repeat profile. 74 106 IPR002110 GO:0005515
Vvi2g894 214 ProSiteProfiles Ankyrin repeat profile. 107 139 IPR002110 GO:0005515
Vvi2g894 214 ProSiteProfiles Ankyrin repeat profile. 41 73 IPR002110 GO:0005515
Vvi2g894 214 Pfam Ankyrin repeats (3 copies) 79 172 IPR002110 GO:0005515
Vvi2g894 214 Gene3D - 6 184 IPR036770 -
Vvi2g894 214 ProSiteProfiles Ankyrin repeat region circular profile. 74 103 - -
Vvi2g894 214 Pfam Ankyrin repeats (many copies) 32 69 IPR002110 GO:0005515
Vvi2g894 214 SUPERFAMILY Ankyrin repeat 12 151 IPR036770 -
Vvi2g894 214 ProSiteProfiles Ankyrin repeat region circular profile. 41 68 - -
Vvi2g894 214 PANTHER - 6 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g894 - - - vvi:100244354 334.724
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g894 . . . . . . . Bma14g00116 . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0531 . . . . . . . Blo03g00846 . Bda07g00133 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013469 1 1 1 1 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 26