Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g90 ATGGTTTTTGGTGCAAAGCTTTCATTCTTCTGTTTCTGGATCGATCCAAGTGTAGGGCTGCCAGCAGAGAAAAAATATATGTATTTCTTTGGGGCTGGGGCAGGAAAGCTGAGGGGAAGGGGAGCAAATCCGACTCCAGGAAGCACTCCAGTACTTGGCGGAGCTGTGCAGAGACGAGAGGATGCCAGCAAGTCTGCGCAGCAGGAACATGAAACTTATCTCTCTCATAAAACGCCATCAATGCTAACTTTAGCAAGAAGATACAACATGGGTGAGAGTCTCTGGACTGTTTTCTGTGGAAGTTCCTGGTGTTGGAGTAAAATTGGAAAGATATGCAGTTCTGGGTTCCTAGCCATCGTCTGTCCATGTTCATGTCTCAATCATATTTTGGTCATTTCTGTTGACATCATCGTCTTGCTCTACTTATTATTTATCTTCATATATAAAGCATCAGCTATGAAGATCTTATCCCCTCAACAGTCTAGATGCTTTTCCACAATGCTAAATTCTGCTGCCTTTCTTAATGGTAGTTTAGGGTTGGTTTATCTCGGTTTGGGGTTCTGGATTGTGGGAGAGAAGCTGAGGCTGAGGCTCTGTTCAGTACTTGCATTCTTTATCGCAGGTTTTCCCTGTGTTACATCTTTCTGGGAAGCTATTGTGGGCGATGCAGTATCAGTTAAGGTGATTTTAGATGTTATATCTTTTCCTGGAGCGATTCTATTGATGTTCTGCACTTTTACGGGACCAAAATATGCAGGAACTGATTCAGGATTTGATGGTGCTGCCTTCTATAGACCTTTGCCAGGTGAAGGAAGCAGTGCTGGTGATAAAATCAATACAGATGCCAGCTTACCCCCTTTTGAGAAAGCTGGGCTTATTAGTAGAATGTCATTTTGGTGGTTGAATTCGTTGATGAAGAAAGGTAAGCAGAAAACTCTCGAGGACAAAGACATTCCACAGCTAAGAAGGGAAGATCGAGCGGAAATGTGTTACTTAATGTTCATGGAACAGCAGAACAAGCAGAAACAGCAAGCCTTCATCCTGGTTGCTGAAGGCAAAGAAGCTTTTAAGTATGAAGGTTATGCACTGACGGGAGGGCTCTTCCTTACTAAATGCTTAGAATCGTTATCAGAGAGGCAGTGGTTCTTTCGAACTAGATTGATTGGGCTCCAAGTGAGATCGTTTCTATCTGCAGCCATCTATCAGAAGCAGCTTAAGCTCTCAAACACTGCAAAGGGGTTGTATTCCCCTGCTCAGATCGTGAGCTTTGTTATTATTGATGCTTACAATATAGCTCTGTTTAAAGGGTACAGTCTGATTCTGTTTTGGTCATCTCCCATTGTAGTATCAGCCATTACTTTCACGGCATGCTACTTTATTGGAACTACTCTCTCTGCTAGCAATGTTTTCACATTTATGGCAAGTTTACGCATTGCCCAGGAGCCAATTAGGTTAATCCCTGATGTCATTACAGCATTCATTGAGGCCAAGGAATCCATTTTTATCAAGAGCAACAGAATTTCATGGGAGGATAACTCTACAAGGGCTACACTAAGGAACATAAATTTGGTGGTTAAGCCTGGGGAAAGGGTAGCTATTTGTGGAGAGGTTGGCTCAGGTAAATCAACACTATTAGCTGCTATTCTTGGAGAAGTTCCACACATTAATGGCATAGTTCGAGTTTATGGAAAGATTGCTTACGTCTCTCAGACAGCTTGGATTCCAACAGGGACCATACAAGAAAATATTCTGTTTGGGTCAGCTATGGATCCTTACAGATACAGAGAGGCTATTGAGAAGTGTGCCCTAGTGAAGGACCTTGAGATGCTTCCATTTGGTGATCTCACTGAAATAGGAGAAAGAGGTGTTAATCTGAGTGGTGGACAAAAGCAACGGGTTCAACTCGCACGCGCATTATATCAGGATGCAGATGTATATCTCCTGGATGATCCATTTAGTGCGGTCGATGCACATACTGCAACCAGTCTATTTAATGAATATGTCATGGGAGCTCTATCAACGAAGACGGTCATACTTGTGACCCACCAGGTGGACTTCCTTCCTGCATTTGATTCGGTTCTGTTAATGTCCGAAGGGGAGATCCTGCAAGCTGCTACCTTTGAGCAACTGATGCACTCTAGTCAAGAGTTCCAGGACCTTGTCAATGCACACAATGCCACAGTTCGTTCTGAGAGGCAACCTGAGCATGATTCTACCCAGAAATCTAAAATTCAGAAGGGAGAGATACAGAAGATTTACACCGAAAAACAATTAAGAGAAACATCAGGAGAGCAATTAATTAAGAAAGAAGAAAGAGAAACAGGAGACACCGGTCTCAAGCCTTACCTACAATACTTGAAATACAGCAAGGGATTCTTGTACTTCTTTTTGGCAACTCTATCTCATATCACATTCATTGTTGAGCAGTTGGTGCAAAACTATTGGTTGGCTGCAAATATCCACAATTCTAGTGTTAGCCAATTGAAACTGATTACAGTATACACAGGGATCGGATTAAGCTTATCACTCTTTTTATTGCTCCGTTCTTTTTTTGTTGTTCTTTTAGGCCTTGGGGCATCACAATCTATATTTTCTACACTGCTGAGCTCTCTTTTTCGAGCACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGGGTATCTTCTGATTTGAGTGTGGTTGACCTTGATGTGGCCTTCAAATTTACTGTTGCTGTCGGGACAACTATGAATGCTTATGCCAATTTTGGAGTATTGACTATTCTTGCCTGGGAACTTGTGTTTGTCATTTTACCAACAATTTATCTAAGTATACTCATCCAGAGGTACTACTTTGCTGCTGGAAAAGAGTTGATGCGAATCAATGGCACGACTAAGTCCTTTGTTGCAAGCCATCTTTCTGAGTCCATTGCTGGAGCTATGACAATTAGAGCTTTCGGGGAGGAAGATAGACACTTTTCAAAGAATTTGGGCTTCATTGACATGAATGCAAGTCCATTCTTCTATAGTTTCACAGCAAATGAGTGGTTGATCCTACGCCTTGAAATACTATCTGCAATCGTTCTCTCATCTTCAGGCCTTGCCCTAACTTTGCTTCATACGAGTACTTCTAAATCTGGATTTATTGGAATGGCATTGTCTTATGGTCTTTCAGCGAATGTATTCCTTGTGTTTTCTGTCCAAAACCAGTGCCATTTAGCAAATATGATTGTTTCTGTTGAAAGATTAGAACAGTACACGAATATTCCTAGCGAAGCCCCTGAAGTCATAGAGAGTAATCGACCACCAGTCAGTTGGCCTACTATTGGTGAAGTGGAAATTTATGATTTGAAGGTCAAGTATCGGCCCAATGCTCCTCTAGTTCTTCATGGAATTAGTTGCAAATTTGGAGGAGGACAGAAAATTGGGATCGTTGGCCGGACTGGTAGTGGAAAGACAACACTTATCAGCATTTTGTTTCGCTTGGTAGAGCCTACAGAGGGACAGATAATTATAGATGGCATAGATATTGCCACAATTGGGCTTCATGATCTCAGATCACGTCTTGGGATCATTCCGCAAGAACCAACTCTCTTTAGTGGGTCTGTAAGATACAATCTTGACCCCTTATCACTGCATACTGATGAGGAAATATGGGTGGTTCTGGAAAAATGTCAACTTCGAGGGGCTGTTCAAGAGAAAGAAGAGGGTCTGGACTCCTTGGTTGTACAAGACGGATCAAATTGGAGCATGGGCCAGCGACAATTATTCTGCTTGGGACGTGCTCTACTGAGGAGAAGTCGGATACTAGTGCTTGATGAAGCCACTGCATCCATAGACAATGCAACCGACTCCATTCTCCAGAAGACCATAAGAACAGAATTTGCAGACTGCACTGTAATTACAGTAGCCCACAGAATCCCAACCGTGATGGACTGCACAATGGTGCTTGCTATCAGTGATGGAAAATTGGTAGAGTACGATGAGCCGATGAAGCTGATAAAGGAGGAGGGATCACTGTTTGGGCAGCTTGTCAAGGAGTACTGGTCTCGCTCTTCAAATGGAAGTAATGCCTCAGGAGATTGGCTCTGA 4083 42.74 MVFGAKLSFFCFWIDPSVGLPAEKKYMYFFGAGAGKLRGRGANPTPGSTPVLGGAVQRREDASKSAQQEHETYLSHKTPSMLTLARRYNMGESLWTVFCGSSWCWSKIGKICSSGFLAIVCPCSCLNHILVISVDIIVLLYLLFIFIYKASAMKILSPQQSRCFSTMLNSAAFLNGSLGLVYLGLGFWIVGEKLRLRLCSVLAFFIAGFPCVTSFWEAIVGDAVSVKVILDVISFPGAILLMFCTFTGPKYAGTDSGFDGAAFYRPLPGEGSSAGDKINTDASLPPFEKAGLISRMSFWWLNSLMKKGKQKTLEDKDIPQLRREDRAEMCYLMFMEQQNKQKQQAFILVAEGKEAFKYEGYALTGGLFLTKCLESLSERQWFFRTRLIGLQVRSFLSAAIYQKQLKLSNTAKGLYSPAQIVSFVIIDAYNIALFKGYSLILFWSSPIVVSAITFTACYFIGTTLSASNVFTFMASLRIAQEPIRLIPDVITAFIEAKESIFIKSNRISWEDNSTRATLRNINLVVKPGERVAICGEVGSGKSTLLAAILGEVPHINGIVRVYGKIAYVSQTAWIPTGTIQENILFGSAMDPYRYREAIEKCALVKDLEMLPFGDLTEIGERGVNLSGGQKQRVQLARALYQDADVYLLDDPFSAVDAHTATSLFNEYVMGALSTKTVILVTHQVDFLPAFDSVLLMSEGEILQAATFEQLMHSSQEFQDLVNAHNATVRSERQPEHDSTQKSKIQKGEIQKIYTEKQLRETSGEQLIKKEERETGDTGLKPYLQYLKYSKGFLYFFLATLSHITFIVEQLVQNYWLAANIHNSSVSQLKLITVYTGIGLSLSLFLLLRSFFVVLLGLGASQSIFSTLLSSLFRAPMSFYDSTPLGRILSRVSSDLSVVDLDVAFKFTVAVGTTMNAYANFGVLTILAWELVFVILPTIYLSILIQRYYFAAGKELMRINGTTKSFVASHLSESIAGAMTIRAFGEEDRHFSKNLGFIDMNASPFFYSFTANEWLILRLEILSAIVLSSSGLALTLLHTSTSKSGFIGMALSYGLSANVFLVFSVQNQCHLANMIVSVERLEQYTNIPSEAPEVIESNRPPVSWPTIGEVEIYDLKVKYRPNAPLVLHGISCKFGGGQKIGIVGRTGSGKTTLISILFRLVEPTEGQIIIDGIDIATIGLHDLRSRLGIIPQEPTLFSGSVRYNLDPLSLHTDEEIWVVLEKCQLRGAVQEKEEGLDSLVVQDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDSILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGKLVEYDEPMKLIKEEGSLFGQLVKEYWSRSSNGSNASGDWL* 1361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 916177 932015 - Vvi2g90 Vvi2g90 782789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g90 1360 SUPERFAMILY ABC transporter transmembrane region 783 1089 IPR036640 GO:0005524|GO:0016021
Vvi2g90 1360 Gene3D - 490 750 IPR027417 -
Vvi2g90 1360 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1109 1343 IPR003439 GO:0005524
Vvi2g90 1360 Pfam ABC transporter 1126 1274 IPR003439 GO:0005524
Vvi2g90 1360 Pfam ABC transporter 518 652 IPR003439 GO:0005524
Vvi2g90 1360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 723 IPR027417 -
Vvi2g90 1360 CDD ABCC_MRP_domain2 1107 1327 - -
Vvi2g90 1360 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 792 1072 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi2g90 1360 Pfam ABC transporter transmembrane region 792 1028 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi2g90 1360 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 502 723 IPR003439 GO:0005524
Vvi2g90 1360 PANTHER ABC TRANSPORTER C FAMILY MEMBER 10-LIKE 499 1359 - -
Vvi2g90 1360 PANTHER ABC TRANSPORTER C FAMILY MEMBER 10-LIKE 195 343 - -
Vvi2g90 1360 PANTHER ABC TRANSPORTER C FAMILY MEMBER 10-LIKE 344 434 - -
Vvi2g90 1360 PANTHER ABC TRANSPORTER C FAMILY MEMBER 10-LIKE 435 499 - -
Vvi2g90 1360 Gene3D - 1093 1344 IPR027417 -
Vvi2g90 1360 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 499 1359 - -
Vvi2g90 1360 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 344 434 - -
Vvi2g90 1360 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 435 499 - -
Vvi2g90 1360 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 195 343 - -
Vvi2g90 1360 SUPERFAMILY ABC transporter transmembrane region 194 460 IPR036640 GO:0005524|GO:0016021
Vvi2g90 1360 ProSitePatterns ABC transporters family signature. 625 639 IPR017871 GO:0005524
Vvi2g90 1360 SMART AAA_5 527 700 IPR003593 -
Vvi2g90 1360 SMART AAA_5 1135 1327 IPR003593 -
Vvi2g90 1360 CDD ABCC_MRP_domain1 507 700 - -
Vvi2g90 1360 Gene3D ABC transporter type 1, transmembrane domain 756 1090 IPR036640 GO:0005524|GO:0016021
Vvi2g90 1360 CDD ABC_6TM_ABCC_D2 791 1084 IPR044726 GO:0140359
Vvi2g90 1360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1099 1336 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g90 K05666 ABCC2; ATP-binding cassette, subfamily C (CFTR/MRP), member 2 - vvi:100260321 1757.65
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g90 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48