Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g901 ATGTCCCTTCTGAGTAGGTTCTTTTACAGAAGACCCCCTGATGGCTTGCTTGAATTTGTTGATAGAGTGTATGTTTTTGATTCATGCTTTTCGACTGAAGTTTTGCCCAATGGGATGTACCAAATATACTTGCATGAAATTATAAACGAGTTACATGAGCAATACCCCGATTCATCCTTTCTTGCCTTCAATTTTCGGGAAGGTGAGAAAAGGAGTCAGTTTGCAGAGATTCTGTGCGAGTATGATGTCACTGTCTTGGACTATCCACGACAATATGAGGGCTGTCCCCTCCTTCCATTGTCTTTGATTCAGCATTTTCTTAGAGTTTGTGGCAGTTGGCTTTCACTTGGGAGTCAGCAGAATATTATTCTGCTCCATTGTGAGAGAGGGGGTTGGCCGCTCTTGGCATTACTTTTAGCTAGCTTCTTGATTTTTAGAAAATTGCACAGTGGTGAACGTAAGACGCTAGAAATCGTCCATCGAGAGGCTCCAAAGGGTTTTTTGCAGCTCTTGTCTCCATTAAACCCATTTCCATCTCAGCTTCGTTATCTCCAGTATGTGGCGAGAAGGAATATATCTCCAGAATGGCCACCTCCTGAGCGAGCTCTTTCTTTGGATTGTGTGTTTCTTCGTGCTATTCCAAGTTTTGATTCACAGAATGGATGCAGGCCAATTATTCGTATTTTTGGTAGAAATCTCCATAGCAAAGGTGGGCTCTCAACCCAAATGCTATTCTCCATGTCCAAGAAGAGGAAAACTATTCGACATTACTGCCAGGCAGATTGTGATGTGATTAAAATAGATATTCAGTGTATGGTGCAAGGAGATGTTGTGCTAGAGTGTGTCCATTTAGATGTGGATTCAGAAAGGGAGGTTATGATGTTTCGTGTAATGTTCAATACTGCTTTTATTCGATCCAACATTTTGATGCTAAACTGTGAAAACTTGGACATACTCTGGGACTCAAAGGAGCGGTATCCAAAGGGCTTTCGAGCAGAGGTTCTGTTTGGCGATGTCGAGAGCATCTCTCCTTCAAGAGCACCGACTGAAATTTTAAATGGCGAGGAGCAAGGTGGATTGCCTATTGAAGCCTTTTCTAGGGTTCAAGAACTCTTCAGTGGTGTTGAATGGGTTGACAACAGTGACGATGCTACTTTATGGCTATTGAAACAACTGTCTGTTCTAAATGATGCGAAAGAACTTTCAAGATTTCCAAATAAAGTCAGTTCACGCACATCACCTGCTGACTCAGAAGAAGAAAATAATGCATCTAGTATTGCTGATAGTTTGGATTTTATGGATTCTGAAAAGGTTAATAGCCTGACTAACACAACTGAACCTGCAGATAATTTCCTTGATGATCCCTCATTTCAGGATTCCGCTTCTGATGAAGCAACTGATATTATTCCTAGTCCTCCAGCTGCTTCAAATCAAGCGTCCATTGAAACAGCTATGTCATCTGTTCACCAGCAATCATCAGTAGAGGTCCTCCACCTCCCCCACCACCTCCCCCTCCTCTCCCTGGTGTCTCCAATAGTGATACTTCCATGCTTGCTGGGCCCCCTCCACCCCCTCCACCTCCAGATTTTTCCTCTTCATCTAGTAATAAGCCAACACTGCCACCTCCACCTCCTCCACCACCTGCTCCACCTCTGCCTATGTTTTCCTCATCGAGTTCAACATCTAGATCTAGTTCAAGTCATGGGGTGCCACCTCCACATCCTCCACCTCCTCCACCTTCTTTGGGTTGTAATCCTAGCAATGCCACTCAACCACCTCTACCCCCACCTCCACCGCCGCTCCCTCCAGGATCCGCCCGACAAGCTTCTTGCCCCCCTACCAGGTCCACCCCCACCACCTGGAGCAAAGGGCACCAATGCACCCCCACCACCACCAACTGGAAGGGGAAGAGCCTCTTCAGGGTCAGCAAGTCATGGAAGAGGTCGAGGTAGTACAGGCTTTACCACTGCCCCTAAGAAAGCTTCATTAAGGCCCTTGCATTGGGTGAAAGTTACCCGAGCAGTGCAAGGGAGTTTATGGGCTGATTCTCAAAAACAGGAAAATCAGTCAAGGGCCCCTGAAATAGATATATCAGAACTTGAAAGTCTATTTTCAGCGGTTTCTACCTCAGATGGAAAGGGCACTGAAAAAGGTGGAGGTCGACGTGGTTCTAATATCAACAAACCCGAGAAAGTCCAATTGGTTGATTTGCGCAGAGCATATAATTGTGAGATAATGCTGACAAAAATAAAAATTCCTTTGCCAGACATGCTTAACGCAATTTTGGCTTTGGATTCTTCAACCTTGGACATTGATCAGGTTGAGAATCTCATTAAATTTTGTCCTACAAAAGAAGAAATGGAGTTGCTGAAGAATTACCCTGGAGACAAGGCAATGCTTGGAAAGTGTGAGCAGTTTTTCCTGGAGCTGATGAAGGTTCCACGAGTTGAATCCAAGTTGCGAGTATTTTCATTTAAAATAACCTTTTCAAGTCAGGTGAAGGACTTAAGGAATAACCTAAATACGATTAATGATGCTGCTAGGGAGGTGAAGGAATCTGTAAAATTGCGTCAGATAATGCAAACAATTCTCACGTTGGGAAATGCACTGAATCAGGGCACAGCACGAGGAGCTGCCATAGGATTCAAGTTGGACAGCCTTCTTAAATTGGCTGATACTCGTGCAAGAAACAACAAAATGACTTTAATGCATTACTTGTGTAAGCTCCTTTCTGAGAAATTGTCAGAGTTGTTGGATTTTGACAAGGATCTTGTTCATTTGGAAGCAGCGTCTAAGATTCAATTGAAATCTTTGGCCGAGGAAATGCAAGCTGTGAGTAAAGGTCTTGAAAAGGTTGAGCAAGAACTCACTGCCTCGGTGAATGATGGTGCTATCTCTGCTGGCTTCCAAAAGGTCTTGAAGAATTTCCTTGACACTGCTGAAGCTGAAGTAAGGTCGCTTATCTCCTTGTATTCTGAAGTGGGAAGAAATGCAGACTCCTTGTCCCAGTACTTTGGAGAAGATCCAGCTCGGTGTCCATTTGAGCAAGTGACCCAAATCTTAGTCGTCTTCATTAAGACATTCAACAAGTCACGCGATGATAATGAAAAACAGGCTGATGCTGAAAAGAAGAAATTGGAAAAGGAAGCCATGAAAGAACGGGCAGCGGGTAATTTATCTGCAAGAAAGGAGGGTGTTGATATTGATAGGACAAAACTTAATTTTCAGCATCAGAGGCATAACCCATAA 3249 43.92 MSLLSRFFYRRPPDGLLEFVDRVYVFDSCFSTEVLPNGMYQIYLHEIINELHEQYPDSSFLAFNFREGEKRSQFAEILCEYDVTVLDYPRQYEGCPLLPLSLIQHFLRVCGSWLSLGSQQNIILLHCERGGWPLLALLLASFLIFRKLHSGERKTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNISPEWPPPERALSLDCVFLRAIPSFDSQNGCRPIIRIFGRNLHSKGGLSTQMLFSMSKKRKTIRHYCQADCDVIKIDIQCMVQGDVVLECVHLDVDSEREVMMFRVMFNTAFIRSNILMLNCENLDILWDSKERYPKGFRAEVLFGDVESISPSRAPTEILNGEEQGGLPIEAFSRVQELFSGVEWVDNSDDATLWLLKQLSVLNDAKELSRFPNKVSSRTSPADSEEENNASSIADSLDFMDSEKVNSLTNTTEPADNFLDDPSFQDSASDEATDIIPSPPAASNQASIETAMSSVHQQSSVEVLHLPHHLPLLSLVSPIVILPCLLGPLHPLHLQIFPLHLVISQHCHLHLLHHLLHLCLCFPHRVQHLDLVQVMGCHLHILHLLHLLWVVILAMPLNHLYPHLHRRSLQDPPDKLLAPLPGPPPPPGAKGTNAPPPPPTGRGRASSGSASHGRGRGSTGFTTAPKKASLRPLHWVKVTRAVQGSLWADSQKQENQSRAPEIDISELESLFSAVSTSDGKGTEKGGGRRGSNINKPEKVQLVDLRRAYNCEIMLTKIKIPLPDMLNAILALDSSTLDIDQVENLIKFCPTKEEMELLKNYPGDKAMLGKCEQFFLELMKVPRVESKLRVFSFKITFSSQVKDLRNNLNTINDAAREVKESVKLRQIMQTILTLGNALNQGTARGAAIGFKLDSLLKLADTRARNNKMTLMHYLCKLLSEKLSELLDFDKDLVHLEAASKIQLKSLAEEMQAVSKGLEKVEQELTASVNDGAISAGFQKVLKNFLDTAEAEVRSLISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILVVFIKTFNKSRDDNEKQADAEKKKLEKEAMKERAAGNLSARKEGVDIDRTKLNFQHQRHNP* 1083
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16853296 16878858 + Vvi2g901 Vvi2g901 783600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g901 1082 SMART PTEN_C2_2 198 338 IPR014020 -
Vvi2g901 1082 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 187 IPR029021 -
Vvi2g901 1082 PANTHER FORMIN-J 1 1060 - -
Vvi2g901 1082 Pfam Formin Homology 2 Domain 656 1028 IPR015425 -
Vvi2g901 1082 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Vvi2g901 1082 MobiDBLite consensus disorder prediction 605 659 - -
Vvi2g901 1082 Gene3D Formin, FH2 domain 655 1040 IPR042201 -
Vvi2g901 1082 Coils Coil 935 955 - -
Vvi2g901 1082 Coils Coil 1029 1056 - -
Vvi2g901 1082 Gene3D - 197 342 - -
Vvi2g901 1082 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Vvi2g901 1082 MobiDBLite consensus disorder prediction 1034 1082 - -
Vvi2g901 1082 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Vvi2g901 1082 MobiDBLite consensus disorder prediction 637 658 - -
Vvi2g901 1082 MobiDBLite consensus disorder prediction 405 429 - -
Vvi2g901 1082 MobiDBLite consensus disorder prediction 609 635 - -
Vvi2g901 1082 SUPERFAMILY Formin homology 2 domain (FH2 domain) 666 1048 - -
Vvi2g901 1082 SMART it6_source 653 1079 IPR015425 -
Vvi2g901 1082 MobiDBLite consensus disorder prediction 441 483 - -
Vvi2g901 1082 MobiDBLite consensus disorder prediction 706 727 - -
Vvi2g901 1082 MobiDBLite consensus disorder prediction 1034 1076 - -
Vvi2g901 1082 ProSiteProfiles Formin homology-2 (FH2) domain profile. 653 1054 IPR015425 -
Vvi2g901 1082 Coils Coil 833 853 - -
Vvi2g901 1082 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g901 - - vvi:100264917 986.482