Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g914 ATGGATAGTAATTATGATCTCTTGGAGGAGCTCTTCAACGTCGAATTGGAGCTTCAAGACGTCCAAGACCAGATTAAGAATTTGCTTGATCGGCAAGAGAAGTTGCATGAGAGACAATCTGAACTGAAAACCCTGTTGGAAGCATGTAAAGGATCAGGAAGCCCTGTAAAGGATGGCGCTTCTGTTGCAGTAGAGAACTGGTCAGGGCCATTTGACTGGGATGCTCAAGCAGATGATGTTAGGTTCAATATTTTTGGCATATCCACATATCGTGCAAACCAGCGTGAGATTATAAATGCAGTCATGAGTGGAAGGGATGTTCTGGTGATCATGGCTGCAGGTGGTGGTAAGAGCCTTTGTTACCAGCTTCCAGCTATACTTCGTGATGGAGTTGCTCTTGTTGTCAGTCCTTTGCTTTCTCTGATTCAGGACCAGGTGATGGGATTGGCTGCTTTAGGAATCCCAGCATACATGTTGACATCTACTACTAGCAAGGAAGATGAGAAGTTCATATACAAGGCACTGGAGAAAGGCGATGGAGACCTTAAAATACTGTATGTCACACCTGAAAAGATATCAAAGAGCAAGAGATTCGTGTCAAAACTTGAAAAGTGTCATCATTCTGGTTGTCTCTCCCTCATTTCAATTGATGAGGCACATTGCTGTAGTCAGTGGGGCCATGACTTTCGCCCAGATTACAAAAATCTTGGCATCTTAAAGACTCAGTTTCCTGATGTTCCAGTAGTTGCTTTGACTGCCACAGCAACGAAGAAGGTCCAAAATGATCTTATGGAAATGCTGCATATCCCGAAATGCATTAAATTTGTCAGCACAGTGAATCGGCCAAATCTTTTTTACATGGTACGCGAAAAGTCATCTGTTGGAAGGGTGGTTATTGATGAAATTGCTGAATATATTCAAGAATCATATCCAAATAATGAATCTGGAATTGTTTATTGCTTCTCTAGGAAGGAATGTGAACAGGTCGCAAAGGAATTACGTGAAAGAGGAATTTCAGCTGATTATTATCACGCAGATATGGATGTGAATGCTCGTGAGAGAGTTCATCTTCGGTGGAGCAATAGCAAGTTGCAGGTCATTGTTGGTACGGTGGCCTTTGGTATGGGAATTAACAAGCCTGATGTCAGGTTTGTCATCCATCACAGCCTAAGTAAATCAATGGAGACATACTACCAGGAAAGTGGTCGAGCTGGAAGAGATGGACTCCCTTCTGAATGCCTGCTCTATTTTAGGCCTGGGGATGTACCTAGGCAGAGTTCAATGGTCTTCTATGAGAATTCTGGATTGCAAAATCTCTATGACATAGTACAATATTGTCAGTCTAAAAGGGAATGTCGTCGAAATGCTTTTTTTCGACATTTTGCTGAGCCATTGCAAGACTGCAACGGGATGTGTGATAACTGTGCATTTTCAACTGAGGTCAAGGAAGTTGATGTTTCCTGTCTTGCAAAAGCTATGATTTCTTTGCTGCAAGATATGCAAGACAACGATCAGAGATTAACAATGTTGCAAATGGTGGACAAGATGAAGGTTAAGAATAAGGACCTAGGTTCTGACCTAAGGAAAGAGGAAATAGAGCACCTTGTGATTCAGCTTATACGGGATCGCGTTTTGAAAGAAGAATTTCAGCATACAGCTTATGCTACAAATGCTTACGTGACATTGGGACTATTGTGGAAGCAAGTATCGCATGGAAAAAGGATTGTTAAGCTTGAGATTTCTACCAAAGTGAAGACTAAGACTGGTAACATGAAATCATCCAAACGCAGCCTGACATCTTCGGGTTTGGAGTTGAAGCTTGATGAGCTACGAAAGGAACTCTCTTCCACTCATGGAGGAATATTCCCTCATTCTGTGTTGTCTACACAACAGATTAGCATCCTCAGTGCCCAGAAACCAACTTCAATTCTAGAGGCAAAGACAATGATTGGAAAGCTGAAGACAGAGAAGTATGGGAGTAAGATTCTTGAAGAGATTGCGAAGTACACCGAGACAGAGCAGCCCGAAAATGTTCCTCCTGATGACAGGCAAGGCAGTGAAAACAGGGCTCCCAAAAGGCTGAAGTCCAATAAGGCAGTGGTTCTGATTGAGAGCAGTGGAGATGAAACATGA 2133 42.52 MDSNYDLLEELFNVELELQDVQDQIKNLLDRQEKLHERQSELKTLLEACKGSGSPVKDGASVAVENWSGPFDWDAQADDVRFNIFGISTYRANQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAILRDGVALVVSPLLSLIQDQVMGLAALGIPAYMLTSTTSKEDEKFIYKALEKGDGDLKILYVTPEKISKSKRFVSKLEKCHHSGCLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPVVALTATATKKVQNDLMEMLHIPKCIKFVSTVNRPNLFYMVREKSSVGRVVIDEIAEYIQESYPNNESGIVYCFSRKECEQVAKELRERGISADYYHADMDVNARERVHLRWSNSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVQYCQSKRECRRNAFFRHFAEPLQDCNGMCDNCAFSTEVKEVDVSCLAKAMISLLQDMQDNDQRLTMLQMVDKMKVKNKDLGSDLRKEEIEHLVIQLIRDRVLKEEFQHTAYATNAYVTLGLLWKQVSHGKRIVKLEISTKVKTKTGNMKSSKRSLTSSGLELKLDELRKELSSTHGGIFPHSVLSTQQISILSAQKPTSILEAKTMIGKLKTEKYGSKILEEIAKYTETEQPENVPPDDRQGSENRAPKRLKSNKAVVLIESSGDET* 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17148050 17187066 - Vvi2g914 Vvi2g914 783613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g914 710 CDD SF2_C_RecQ 281 417 - -
Vvi2g914 710 SMART helicmild6 327 408 IPR001650 -
Vvi2g914 710 Pfam Helicase conserved C-terminal domain 308 407 IPR001650 -
Vvi2g914 710 Gene3D - 281 477 IPR027417 -
Vvi2g914 710 Pfam RecQ zinc-binding 420 476 IPR032284 -
Vvi2g914 710 ProSiteProfiles HRDC domain profile. 597 676 IPR002121 GO:0003676
Vvi2g914 710 Gene3D HRDC domain 601 671 IPR044876 -
Vvi2g914 710 MobiDBLite consensus disorder prediction 669 710 - -
Vvi2g914 710 Pfam DEAD/DEAH box helicase 92 260 IPR011545 GO:0003676|GO:0005524
Vvi2g914 710 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 273 IPR014001 -
Vvi2g914 710 Coils Coil 11 38 - -
Vvi2g914 710 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 298 447 IPR001650 -
Vvi2g914 710 Gene3D - 481 582 IPR036388 -
Vvi2g914 710 CDD DEXHc_RecQ1 73 280 - -
Vvi2g914 710 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 83 510 IPR004589 GO:0004386|GO:0006310
Vvi2g914 710 PANTHER DNA HELICASE RECQ FAMILY MEMBER 9 676 - -
Vvi2g914 710 PANTHER ATP-DEPENDENT DNA HELICASE Q1 9 676 - -
Vvi2g914 710 MobiDBLite consensus disorder prediction 669 694 - -
Vvi2g914 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 424 IPR027417 -
Vvi2g914 710 SMART ultradead3 86 289 IPR014001 -
Vvi2g914 710 Pfam HRDC domain 606 666 IPR002121 GO:0003676
Vvi2g914 710 Gene3D - 54 280 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g914 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4] - vvi:100256266 1364.75
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g914 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0592 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009488 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 33