Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g92 ATGTTGAGGGTAAGTCATACCAAAACCCAAGTTACATCAAAACTAATAAAGGTTAAACTCAAATCACTTACCAAGCATTTAATTAGAAATATAGAGATGGAAGAAATTGATAGAGATTTTGGGATCATAATTTTATATTTTCTAATCTCATTCTTAATCTTACAAAACCAAATATTAATTATAAATGATGTCATTTTCTCGAACCAAACCTTATATATGTGGTACATAATATTTTCTCCACCCCCATGTTCTGTGCTTTCTATAATTGGTTTTACCTGTGTTACATCTTTCTGGGAAGCTATTGTGGGCGATGCAGTATCAGTTAAGGTGATTTTAGATGTTATATCTTTTCCTGGAGCGATTCTATTGATGTTCTGCACTTTCTCGGAACCAAAATATGCAGGAACTGATTCAGGATTTGATGGTGCTGCCTTCTATACACCTTTGCCAGGCGAAGGAGGCAGTAAGCAGAAAACTCTCGAGGACAAAGACATTCCACAGCTAAGAAGGGAAGATCGAGCGGAAATGTGTTACTTAATGTTCATGGAACAGCAGAACAAGCAGAAAAAGCAGTCATCTGACTCCCCTTCCATTTTATCGTTTCTATCTGCAGCCATCTATCAGAAGCAGCTTAAGCTCTCAAATGCTGCAAAGGGGTCATATTCCCCTGGTCAGATCATAAACTTTGTTACTATTGATGCTTACAACATAGGTGAATACCCGTACTGGTTTCACCAGATCTGGTCAACAAGCGTCCAGTTGTGTCTGGCATTGATTATTATTTACTATTCGGTGGGGCTTGCAACTATAGCAGCTCTGTTTAGGCTGAAGGCTTTTGCAGAGGCACTTACAAACATGAAAAGTCTGAAGCTGTATGCTTGGGAGACTCATTTCAAGAATGTCATAGAACGGTTAAGGAAAGAGGAATTCAAGTGGTTATTGTCAGTTCTGTCACAGAAAGGGTACAATCTGATTCTGTTTTGGTCATCTCCCATTGTACTCGCAGAATCCGTTTTTATCAAGAGCAAAAGAATTTCATGGGAGGATAACTCTACAAGGGCTACTCTACGAAACATAAATTTGGTGGTTAAGCCTGGGGAAAAGGTAGCTATTTGTGGAGAGGTTGGCTCAGGTAAATCGACACTATTAGCTGCTATTCTTGGAGAAGTTCCACACGTTAATGGCATAGTTCGAGTTTATGGGAAGATTGCTTACGTCTCTCAGACAGCATGGATTCCAACAGGGACAATACAAGAAAATATTCTGTTTGGGTCTGCTATGGATCCTTACAGATACAGAGAGGCTATTGAGAAGTGTGCCCTAGTGAAGGACCTTGAGATGCTTCCATTCGGTGATCTCACTGAAATAGGAGAAAGAGGTGTTAATCTGAGTGGTGGACAGAAACAGCGGGTTCAACTTGCACGTGCTTTATATCGGGATGCAGATGTATATCTCCTGGATGATCCATTTAGTGCGGTTGATGCACATACTGCAACCAATCTATTTAATGAATATGTCATGGGAGCTCTATCAATGAAGACAGTCATACTTGTGACCCACCAAGTGGACTTCCTCCCTGCATTCGATTCGGTTTTGTTAATGTCCGAAGGGGAGATCCTGCAAGCTGCTACCTTTGACCAGCTGATGCACTCTAGTCAAGAGTTCCAGGACCTTATCATTGCACACAATGCCACAGTTGGTTCTGAGAGGCAACCTGAGCATGATTCTACCCAGAAGTCTAAAATTCCGAAGGGAGAGATACAAAAGATTGACAGCGAAAAACAGTTAAGAGATTCATTAGGAGAACAGTTAATTAAGAAAGAAGAAAGAGAAACGGGAGACACTGGTCTGAAGCCTTACCTACAATACTTGAAATATAGCAAGGGATTGTTCTACTTCTTTTTGGCAAATCTATCTCATATCATATTCATTGTTGCGCAGTTGGTGCAAAACTATTGGTTGGCTGCAAATGTCCAGAATCCTAGTGTTAGCCAATTGAAACTGATTGCAGTATACACAGGGATTGGATTAAGCTTATCAATATTTTTGTTGCTCCGATCATTTTTTGTTGTTGTTGTAGGCCTTGGGGCATCGCAATCTATTTTTTCTACACTGCTGAGCTCCCTTTTTCGAGCACCAATGTCCTTTTATGACTCGACACCTCTGGGAAGGATACTCAGTCGGGTATCTTCTGATTTAAGTGTGGTTGACCTTGATATGGCCTTCAAATTTACTTTTGCTATTGGGGCAGCTGTGACTACTTATGCCAGTTTTGGAGTATTGGCTATTCTTGCCTGGGAACTTGTGTTTGTCATTTTACCAACAATTTATCTTAGTATACTCATCCAGAGGTACTACTTTGCTGCTGGAAAAGAATTGATGCGAATCAATGGCACGACGAAGTCCTTTGTTGCAAGCCATCTTGCTGAGTCCATTGCCGGTGCTATGACAATTAGAGCTTTCGGGGAGGAAGATAGACACTTTTCAAAGAATTTGGACTTCATTGACATAAATGCAAGTCCATTCTTCTACAGTTTCACAGCAAATGAGTGGTTGATCCAACGCCTTGAAATACTATGTGCTATCGTTCTCTCATCTTCAGCCCTTGCCCTAACATTGCTTCATACGAGTTCTTCTAAATCTGGATTTATTGGAATGGCATTATCGTATGGCCTTTCAGTGAATGTATTCTTCGTATTTTCTGCCCAAAGCCAGTGCCTTTTAGCAAATATGATTGTTTCTGTTGAAAGATTAGAACAGTACATGAATATTCCTAGCGAAGCCCCTGAAGTCATAGGGAGTAATCGACCGCCACCCAGTTGGCCTACTATTGGTGAAGTGGAAATTTATGATTTGAAGGTCAAGTATCGGCCCAATGCTCCTCTAGTTCTTCAAGGAATCAGTTGCAAATTTGGAGGAGGACAGAAAATTGGGATCGTTGGCCGGACTGGTAGTGGAAAGACAACTCTTATCAGCGCTTTGTTTCGCTTGGTAGAGCCTACAGAGGGACAGATAATTATAGATGGCATAAATATTTCCACAATTGGGCTTCATGATCTCAGATCACGTCTTGGGATCATTCCACAAGAACCAACTCTGTTTAGCGGGTCTATAAGATACAATCTTGACCCTTTATCGCTGCATACTGATGAGGAAATATGGGAGGTTCTGGGAAAATGTCAACTTCGAGGGGCTGTTCAAGAGAAAGAAGAGGGCCTGGACTCCTTAGTTGTACATGACGGATCAAATTGGAGCATGGGCCAGCGACAATTATTCTGCTTGGGACGTGCCCTACTGAAGAGAAGTCGGATACTAGTGCTTGATGAAGCCACTGCATCTATAGACAATGCAACAGACTCCATTCTCCAGAAGACCATAAGAACAGAATTTGCAGACTGCACTGTAATTACAGTAGCCCACAGAATCCCAACCGTGATGGACTGCACAATGGTGCTTGCTATCAGTGACGGAAAATTAGTAGAGTACGATGTGCCAATGAAACTGATAAAGAAGGAGGGATCGCTGTTTGGGCAGCTTGTCACGGAGTACTGGTCTCGATCTTCAAATGGCAGTAACGCCTCAGGAGATTGGCTCTGA 3597 41.65 MLRVSHTKTQVTSKLIKVKLKSLTKHLIRNIEMEEIDRDFGIIILYFLISFLILQNQILIINDVIFSNQTLYMWYIIFSPPPCSVLSIIGFTCVTSFWEAIVGDAVSVKVILDVISFPGAILLMFCTFSEPKYAGTDSGFDGAAFYTPLPGEGGSKQKTLEDKDIPQLRREDRAEMCYLMFMEQQNKQKKQSSDSPSILSFLSAAIYQKQLKLSNAAKGSYSPGQIINFVTIDAYNIGEYPYWFHQIWSTSVQLCLALIIIYYSVGLATIAALFRLKAFAEALTNMKSLKLYAWETHFKNVIERLRKEEFKWLLSVLSQKGYNLILFWSSPIVLAESVFIKSKRISWEDNSTRATLRNINLVVKPGEKVAICGEVGSGKSTLLAAILGEVPHVNGIVRVYGKIAYVSQTAWIPTGTIQENILFGSAMDPYRYREAIEKCALVKDLEMLPFGDLTEIGERGVNLSGGQKQRVQLARALYRDADVYLLDDPFSAVDAHTATNLFNEYVMGALSMKTVILVTHQVDFLPAFDSVLLMSEGEILQAATFDQLMHSSQEFQDLIIAHNATVGSERQPEHDSTQKSKIPKGEIQKIDSEKQLRDSLGEQLIKKEERETGDTGLKPYLQYLKYSKGLFYFFLANLSHIIFIVAQLVQNYWLAANVQNPSVSQLKLIAVYTGIGLSLSIFLLLRSFFVVVVGLGASQSIFSTLLSSLFRAPMSFYDSTPLGRILSRVSSDLSVVDLDMAFKFTFAIGAAVTTYASFGVLAILAWELVFVILPTIYLSILIQRYYFAAGKELMRINGTTKSFVASHLAESIAGAMTIRAFGEEDRHFSKNLDFIDINASPFFYSFTANEWLIQRLEILCAIVLSSSALALTLLHTSSSKSGFIGMALSYGLSVNVFFVFSAQSQCLLANMIVSVERLEQYMNIPSEAPEVIGSNRPPPSWPTIGEVEIYDLKVKYRPNAPLVLQGISCKFGGGQKIGIVGRTGSGKTTLISALFRLVEPTEGQIIIDGINISTIGLHDLRSRLGIIPQEPTLFSGSIRYNLDPLSLHTDEEIWEVLGKCQLRGAVQEKEEGLDSLVVHDGSNWSMGQRQLFCLGRALLKRSRILVLDEATASIDNATDSILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGKLVEYDVPMKLIKKEGSLFGQLVTEYWSRSSNGSNASGDWL* 1199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 933099 947137 - Vvi2g92 Vvi2g92 782791

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g92 1198 CDD ABCC_MRP_domain1 345 538 - -
Vvi2g92 1198 Pfam ABC transporter transmembrane region 631 877 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi2g92 1198 Gene3D ABC transporter type 1, transmembrane domain 30 338 IPR036640 GO:0005524|GO:0016021
Vvi2g92 1198 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 947 1181 IPR003439 GO:0005524
Vvi2g92 1198 CDD ABC_6TM_ABCC_D2 629 922 IPR044726 GO:0140359
Vvi2g92 1198 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 641 917 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi2g92 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 937 1174 IPR027417 -
Vvi2g92 1198 Gene3D - 339 586 IPR027417 -
Vvi2g92 1198 SUPERFAMILY ABC transporter transmembrane region 199 323 IPR036640 GO:0005524|GO:0016021
Vvi2g92 1198 Gene3D - 931 1182 IPR027417 -
Vvi2g92 1198 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 52 200 - -
Vvi2g92 1198 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 275 339 - -
Vvi2g92 1198 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 200 274 - -
Vvi2g92 1198 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 337 1197 - -
Vvi2g92 1198 Gene3D ABC transporter type 1, transmembrane domain 595 928 IPR036640 GO:0005524|GO:0016021
Vvi2g92 1198 SMART AAA_5 365 538 IPR003593 -
Vvi2g92 1198 SMART AAA_5 973 1165 IPR003593 -
Vvi2g92 1198 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 202 274 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi2g92 1198 Pfam ABC transporter 356 490 IPR003439 GO:0005524
Vvi2g92 1198 Pfam ABC transporter 964 1112 IPR003439 GO:0005524
Vvi2g92 1198 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 340 561 IPR003439 GO:0005524
Vvi2g92 1198 ProSitePatterns ABC transporters family signature. 463 477 IPR017871 GO:0005524
Vvi2g92 1198 PANTHER ABC TRANSPORTER C FAMILY MEMBER 10-LIKE 275 339 - -
Vvi2g92 1198 PANTHER ABC TRANSPORTER C FAMILY MEMBER 10-LIKE 52 200 - -
Vvi2g92 1198 PANTHER ABC TRANSPORTER C FAMILY MEMBER 10-LIKE 337 1197 - -
Vvi2g92 1198 PANTHER ABC TRANSPORTER C FAMILY MEMBER 10-LIKE 200 274 - -
Vvi2g92 1198 CDD ABCC_MRP_domain2 945 1165 - -
Vvi2g92 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 559 IPR027417 -
Vvi2g92 1198 SUPERFAMILY ABC transporter transmembrane region 619 927 IPR036640 GO:0005524|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g92 K05666 ABCC2; ATP-binding cassette, subfamily C (CFTR/MRP), member 2 - vvi:100265535 1630.15
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g92 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48