Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g920 ATGACGCGAGGGAAGCAGAAGATCGAAGCGCAGAGGCGGAACGCAGAGAGGAACCAGAAGCCCAAGGGATCTCAGTTTGAGGCTCGTGCTGTTGCCCTCAAAATCACTTGTCCTATCTGCAAAGTGCAGCTAGCAAATCAGAACCAGCTTGGTGATCACTACTCGTCCAAACATCCAAAGGAAAAGCCGCCTTCTGATTCGGGTTGA 207 51.69 MTRGKQKIEAQRRNAERNQKPKGSQFEARAVALKITCPICKVQLANQNQLGDHYSSKHPKEKPPSDSG* 69
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17315923 17324687 - Vvi2g920 Vvi2g920 783619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g920 68 Pfam Zinc-finger of C2H2 type 36 57 - -
Vvi2g920 68 PANTHER GEO09665P1-RELATED 1 66 IPR045230 -
Vvi2g920 68 ProSitePatterns Zinc finger C2H2 type domain signature. 37 58 IPR013087 -
Vvi2g920 68 MobiDBLite consensus disorder prediction 1 25 - -
Vvi2g920 68 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 63 IPR013087 -
Vvi2g920 68 SUPERFAMILY Expressed protein At2g23090/F21P24.15 1 64 - -
Vvi2g920 68 Gene3D - 1 66 IPR026939 -
Vvi2g920 68 MobiDBLite consensus disorder prediction 1 23 - -
Vvi2g920 68 PANTHER GEO09665P1-RELATED 1 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g920 - - - ming:122068724 134.806
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g920 Blo02g01166 . . . Bpe05g00712 . . . . Cmo16g00571 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe01g00527 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011529 0 0 1 1 1 0 2 1 1 1 1 1 1 1 1 2 0 2 1 0 0 1 1 0 1 1 0 1 1 1 25