Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g921 ATGAGCACCTTTCTGATCAGATGTCTGGTGCCGTTGCCCTTTTACCTTCTACTGCTGTACATTCTAATGAATCAAAGCAAAGCTCTAAGTCCTGATGGTGAGGCGCTTTTAAGCTTTAGGAATTCAATTGTTAGTTCAGATGGCGTCCTTCGTCAATGGAGACCAGAGGATCCTGACCCATGTGGTTGGAAAGGAGTGACATGTGATTTAGAAACCAAGAGAGTAATATACTTGAATCTTCCTCATCACAAGTTGAGTGGATCAATTTCACCTGATATTGGGAAGCTAGAGCTCTTGAAGCTTTTGGCTCTTCAAAACAACAACTTTTATGGAACGATTCCTTCAGAATTGGGAAATTGCACAGAGTTGCAAGCATTATATTTGCAGGGCAACTACTTAAGTGGATTAATTCCTAGTGAGTTGGGTAGCCTTTTAGAGCTTAAAGATCTGGATATTTCAAGCAACTCTCTCAGTGGATATATTCCTCCATCACTTGGGAAGTTAGACAAGCTCTCAACTTTCAATGTGTCAACCAATTTTCTGGTTGGACCAATACCATCTGATGGTGTACTCACCAATTTTTCTGGGAACTCCTTTGTCGGAAATCGCGGTTTGTGTGGGAAGCAGATTAATATCACCTGCAAAGACGACAGTGGAGGGGCTGGAACAAAATCACAACCTCCCATTTTAGACCAAAACCAAGTTGGGAAGAAGAAATACTCTGGCCGACTACTTATAAGTGCATCAGCAACAGTGGGTGCACTGCTTTTGGTGGCACTTATGTGCTTTTGGGGCTGCTTTCTTTATAAAAAATGTGGTAAAAATGATGGCAGGAGTCTTGCAATGGATGTTAGTGGAGGTGCATCAATTGTTATGTTTCATGGAGACCTGCCATACTCTTCAAAAGATATCATCAAAAAGCTGGAGACATTGAATGAGGAACACATAATTGGTTCAGGCGGCTTTGGAACAGTGTACAAGCTTGCCATGGATGATGGCAATGTGTTTGCTTTGAAAAGAATTGTAAAGATGAATGAGTGCTTTGATCGTTTTTTTGAGAGGGAGCTTGAAATTCTTGGAAGCATAAAACACAGATACCTGGTGAATTTGCGAGGATATTGCAATTCTCCCACCTCCAAATTGTTAATTTATGATTACTTACCTGGCGGTAGCCTGGATGAGGCTCTTCATGAGAGATCAGAGCAACTAGACTGGGATGCACGCTTGAATATTATCATGGGAGCTGCAAAAGGACTAGCCTACCTGCATCATGATTGTTCCCCTCGGATTATACACCGTGACATAAAGTCGAGCAACATCTTGCTTGATGGCAATTTGGAGGCTCGAGTATCTGACTTTGGACTTGCTAAATTGTTGGAGGATGAGGAATCTCATATTACAACCATTGTAGCAGGAACTTTTGGTTATTTGGCTCCAGAGTATATGCAAAGCGGTAGAGCAACAGAGAAAACCGACATTTATAGTTTTGGGGTTCTGATGCTTGAAGTATTGGCTGGGAAGCGACCCACTGATGCTTCGTTCATTGAAAAGGGCCTCAACATTGTTGGCTGGTTGAATTTTCTGGTTACAGAAAATAGGCAACGGGAGATTGTTGATCCACAATGTGAAGGGGTCCAGTCAGAAAGTCTTGATGCCCTGCTCTCGGTTGCCATCCAGTGTGTATCTCCAGGACCTGAGGATCGCCCAACGATGCACAGGGTGGTCCAGATACTTGAATCTGAAGTCATGACTCCATGCCCTAGTGACTTTTATGATTCCAACTCAGACTGA 1791 42.83 MSTFLIRCLVPLPFYLLLLYILMNQSKALSPDGEALLSFRNSIVSSDGVLRQWRPEDPDPCGWKGVTCDLETKRVIYLNLPHHKLSGSISPDIGKLELLKLLALQNNNFYGTIPSELGNCTELQALYLQGNYLSGLIPSELGSLLELKDLDISSNSLSGYIPPSLGKLDKLSTFNVSTNFLVGPIPSDGVLTNFSGNSFVGNRGLCGKQINITCKDDSGGAGTKSQPPILDQNQVGKKKYSGRLLISASATVGALLLVALMCFWGCFLYKKCGKNDGRSLAMDVSGGASIVMFHGDLPYSSKDIIKKLETLNEEHIIGSGGFGTVYKLAMDDGNVFALKRIVKMNECFDRFFERELEILGSIKHRYLVNLRGYCNSPTSKLLIYDYLPGGSLDEALHERSEQLDWDARLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDIYSFGVLMLEVLAGKRPTDASFIEKGLNIVGWLNFLVTENRQREIVDPQCEGVQSESLDALLSVAIQCVSPGPEDRPTMHRVVQILESEVMTPCPSDFYDSNSD* 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17330097 17381317 + Vvi2g921 Vvi2g921 783620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g921 596 Gene3D Transferase(Phosphotransferase) domain 1 387 585 - -
Vvi2g921 596 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FEI 1 4 596 IPR031071 GO:0004672|GO:0005524|GO:0030244
Vvi2g921 596 SUPERFAMILY Protein kinase-like (PK-like) 294 578 IPR011009 -
Vvi2g921 596 ProSiteProfiles Protein kinase domain profile. 311 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g921 596 PANTHER RECEPTOR-LIKE PROTEIN 55 4 596 - -
Vvi2g921 596 Gene3D Phosphorylase Kinase; domain 1 285 386 - -
Vvi2g921 596 Pfam Protein kinase domain 313 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g921 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 430 442 IPR008271 GO:0004672|GO:0006468
Vvi2g921 596 Gene3D Ribonuclease Inhibitor 30 216 IPR032675 -
Vvi2g921 596 SMART serkin_6 311 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g921 596 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Vvi2g921 596 ProSitePatterns Protein kinases ATP-binding region signature. 317 343 IPR017441 GO:0005524
Vvi2g921 596 SUPERFAMILY L domain-like 30 200 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76550 PF00069 Pkinase 3.10E-47 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g921 - - vvi:100264793 1181.39