Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g923 ATGGAGGCCATTCGCAAGCAGGCAAGCAAGCTGAGGGAGCAAGTAGCCAGGCAGCAACAGGCAGTTCTGAAACAATTGGGACATTTTGGTATTGAAACTGTTGTGGTTGATGAAGCTGAACAGAGGCAATTACAGAACTTGTACAATTCTACAAGGACGGCTAAGCATTTTCAGAAGGACATTGTTCGTGGTATTGAAGGTTTTGTTTCTACAAGCTCAAAGCAAATGGAGATAGTAAGAAGGATGGCTGAAGATTGTTGCAAATATGGAACTGAGAATCAAAGCACTGGTTCTCCTCTTGCAAGAGCTGCTCTTTACTTTGGCAACTCACATAGTTCAATGGAAAAAGAGAGGGAGACTTTGCTTGGGGTCTTCTGTGATCAGGTTTCTGAGCCACTACGAGTATTAATAACAGGAGCTCCTTTGGAGGATGCTCGCCACTTGACTCACCGCTATGAAAGACTTCGCCAAGAGGTGGAGTCCCAGGCAGCTGATGTGTTAAGGCGCCAAGCAAAGTTCAGGGACCCTGCTACTTCTGCAGAGAGTTCCATAAAGCTTCAAAGTGCAGAAGCAAAATTGAGTGAGCTTAAATCTGCTATGATGGCACTTGGCAGAGAAGCAACTGCTGCTATGCTGTCAGTTGAGGCTCAGCAGCAGCGAATAACATTCCAACGGCTTCTTACTATGGTGGAAGCTGAGAGATCTTATCATCAAACTGTACTTGCTACTTTAGAGAAACTATACGATGAGATGATTATGGAGAAGAAACAAAACGAGTCTTCATCTCAGCCAATAACTATGGAGAAAGATGTTTGCGTTCCTACCACATCCAAGGATGCAAATTCAAATGGCTTTGACAATCATGGACATGCAAATCAAAATGGTTCATACTTTATTGCAAAAGTTATACACCCATTTGATGCTCAAGCAGATGGAGAGCTCGGTCTTTCTGTTGATGATTATGTTGTCGTTCGCCAGGTGGCTCCCAACGGATGGTCGGAGGGTGAATGCAAGGGCACGGCCGGATGGTTTCCCTCTGCTTATGTAGAAAGGCGTGACAAAGCTCCGGCCAGCGTGATAAATGAAGAAGCAAGTCTCGCCATGATTCCAAACTGA 1116 44.98 MEAIRKQASKLREQVARQQQAVLKQLGHFGIETVVVDEAEQRQLQNLYNSTRTAKHFQKDIVRGIEGFVSTSSKQMEIVRRMAEDCCKYGTENQSTGSPLARAALYFGNSHSSMEKERETLLGVFCDQVSEPLRVLITGAPLEDARHLTHRYERLRQEVESQAADVLRRQAKFRDPATSAESSIKLQSAEAKLSELKSAMMALGREATAAMLSVEAQQQRITFQRLLTMVEAERSYHQTVLATLEKLYDEMIMEKKQNESSSQPITMEKDVCVPTTSKDANSNGFDNHGHANQNGSYFIAKVIHPFDAQADGELGLSVDDYVVVRQVAPNGWSEGECKGTAGWFPSAYVERRDKAPASVINEEASLAMIPN* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17393636 17408885 - Vvi2g923 Vvi2g923 783622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g923 371 Gene3D SH3 Domains 282 365 - -
Vvi2g923 371 PANTHER SH3 DOMAIN-CONTAINING PROTEIN 2 1 361 - -
Vvi2g923 371 Coils Coil 186 206 - -
Vvi2g923 371 Coils Coil 1 21 - -
Vvi2g923 371 Gene3D Arfaptin homology (AH) domain/BAR domain 39 274 IPR027267 -
Vvi2g923 371 SUPERFAMILY SH3-domain 297 359 IPR036028 GO:0005515
Vvi2g923 371 SMART SH3_2 298 353 IPR001452 GO:0005515
Vvi2g923 371 Pfam Variant SH3 domain 302 350 IPR001452 GO:0005515
Vvi2g923 371 ProSiteProfiles Src homology 3 (SH3) domain profile. 295 354 IPR001452 GO:0005515
Vvi2g923 371 PANTHER SH3 DOMAIN-CONTAINING 1 361 - -
Vvi2g923 371 SUPERFAMILY BAR/IMD domain-like 42 251 IPR027267 -
Vvi2g923 371 Coils Coil 145 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g923 - - - vvi:100249391 726.857
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g923 . . . . . . Bma07g01221 . . . . . . . . . Cpe02g00590 . . . . . . . . . . . . . . . . Cone6ag0875 Cone9ag0881 . . . . . . . Bda09g00465 Bpe08g01063 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012200 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 0 1 1 1 27