Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g925 ATGGTAATTCAAACTAACAACACTGGTAATCAATTGGCGTCTCCAAATGATATTCAATCCAATGTAATCTCCGGGGGTGGATCCTATCTCATGAATATATCACTCGGAACCCCACCAGTTTCAATGCTTGGCATTGCTGATACTGGAAGTGATCTCATATGGAGGCAGTGTCTGCCTTGTGATGATTGTTACAAGCAAGTAGAACCTCTCTTCGATCCCAAAAAGTCGAAAACCTACAAAACTTTAGGCTATCTCTCCTCTGAAACCTTCACAATTGGGTCTACTGAAGGTGATCCAGCTTCGTTTCCAGGCCTTGCGTTTGGGTGCGGGCACAGCAATGGAGGAACCTTCAATGAAAAGGATAGTGGCTTAATAGGCCTTGGGGGTGGCCCTCTTTCACTAGTTATGCAATTGAGTTCCAAAGTGGGCGGACAGTTCTCCTACTGCCTGGTGCCACTATCAAGCGATTCAACTGCTTCAAGCAAGATAAATTTCGGTAAAAGCGCAGTTGTTTCGGGTTCTGGGACGTCTTCGCCTGCAGCTGCGGAGGAGAGCAACATTATCATTGATTCAGGGACGACCCTAACCCTTCTCCCCCGAGACTTCTACACTGATATGGAATCAGCCCTAACAAAGGTCATCGGCGGCCAAACTACTACTGACCCGAGAGGGACTTTCAGCCTTTGTTACAGTGGCGTAAAAAAATTAGAAATCCCCACCATTACTGCTCATTTCATCGGGGCAGACGTGCAGTTGCCGCCATTGAACACATTTGTCCAAGCGCAGGAAGATTTGGTTTGCTTCTCCATGATTCCGTCTTCCAATTTGGCCATCTTTGGCAACCTGTCTCAAATGAACTTCTTGGTAGGGTATGATCTCAAGAACAATAAGGTTTCCTTCAAGCCTACTGATTGCACTAAGCAGTAG 927 46.39 MVIQTNNTGNQLASPNDIQSNVISGGGSYLMNISLGTPPVSMLGIADTGSDLIWRQCLPCDDCYKQVEPLFDPKKSKTYKTLGYLSSETFTIGSTEGDPASFPGLAFGCGHSNGGTFNEKDSGLIGLGGGPLSLVMQLSSKVGGQFSYCLVPLSSDSTASSKINFGKSAVVSGSGTSSPAAAEESNIIIDSGTTLTLLPRDFYTDMESALTKVIGGQTTTDPRGTFSLCYSGVKKLEIPTITAHFIGADVQLPPLNTFVQAQEDLVCFSMIPSSNLAIFGNLSQMNFLVGYDLKNNKVSFKPTDCTKQ* 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17430557 17432766 - Vvi2g925 Vvi2g925 783624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g925 308 CDD pepsin_A_like_plant 29 305 IPR034161 -
Vvi2g925 308 Pfam Xylanase inhibitor N-terminal 29 82 IPR032861 -
Vvi2g925 308 Gene3D Acid Proteases 8 81 IPR021109 -
Vvi2g925 308 SUPERFAMILY Acid proteases 23 305 IPR021109 -
Vvi2g925 308 ProSiteProfiles Peptidase family A1 domain profile. 29 301 IPR033121 -
Vvi2g925 308 PANTHER OS07G0603500 PROTEIN-RELATED 182 306 - -
Vvi2g925 308 PANTHER OS07G0603500 PROTEIN-RELATED 16 82 - -
Vvi2g925 308 PANTHER OS07G0603500 PROTEIN-RELATED 83 178 - -
Vvi2g925 308 Gene3D Acid Proteases 163 308 IPR021109 -
Vvi2g925 308 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 182 306 - -
Vvi2g925 308 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 83 178 - -
Vvi2g925 308 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 16 82 - -
Vvi2g925 308 Gene3D Acid Proteases 82 162 IPR021109 -
Vvi2g925 308 Pfam Xylanase inhibitor C-terminal 163 301 IPR032799 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g925 - - - vvi:100252746 544.658
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g925 Blo02g01168 . . . . . . . . Cmo16g00568 . . . . . Cpe14g00442 . . . . . . . . . . . . . . . . . Cone6ag0876 . . . . . . . . . . . . . . . . . Cma16g00522 . . Cpe01g00529 . . . . . . . . . . . . . . . . Csa04g00694 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001425 8 2 3 3 3 2 0 2 2 2 1 2 4 2 1 7 2 3 4 2 2 4 2 1 1 2 1 3 1 2 74