Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g926 ATGGAAGGCTTCGGGGTGAAGATTTTCTTCAATGTTGTAGTAGTAGGGTTCTTGTTCCAACTCCTCGAGGTGGCTCTGGCCAGAGGCGGCGGCTTCAGTGTCGACCTCATCCACCGTGATTCCCCTCATTCTCCGTTCTTTGATCCTTCAAAGACTCAGGCGGAGCGGCTGACGGACGCGTTCCGCCGGTCTGTTTCTCGTGTCGGCCGCTTCAGGCCTACTGCCATGACCTCGGATGGAATTCAATCCAGGATAGTCCCGTCGGCCGGGGAATATCTCATGAATTTGTATATCGGAACTCCACCAGTTCCGGTCATCGCCATTGTTGATACCGGCAGTGATCTCACCTGGACGCAGTGCCGGCCCTGTACTCACTGTTACAAGCAGGTTGTCCCATTATTTGACCCCAAAAATTCATCAACTTACAGAGATTCTTCCTGTGGAACAAGCTTTTGTCTGGCTCTGGGGAAGGACCGCTCATGTAGCAAAGAAAAAAAATGCACATTCAGGTATTCCTACGCCGATGGCTCCTTTACCGGGGGAAACCTAGCATCGGAGACGCTCACTGTCGATTCCACCGCCGGAAAACCAGTAAGCTTTCCGGGATTCGCGTTCGGTTGTGGGCACAGCAGTGGTGGCATATTCGATAAAAGCAGCTCTGGGATAGTAGGCCTTGGAGGTGGGGAGTTGTCCCTGATTTCCCAGTTGAAATCCACCATAAACGGACTTTTTTCATACTGTTTGCTGCCTGTTTCCACCGATTCCAGCATCTCCAGCAGGATAAATTTTGGCGCATCCGGCAGAGTCTCCGGTTACGGCACCGTCTCCACTCCGCTAAGGCTGCCATACAAGGGCTATTCGAAGAAGACTGAAGTTGAAGAGGGAAACATCATCGTTGATTCCGGGACAACCTATACCTTTCTCCCCCAGGAGTTTTACAGCAAGTTGGAGAAATCTGTAGCAAATTCCATTAAAGGGAAACGAGTCAGAGACCCAAATGGGATTTTCAGTCTGTGCTATAACACTACAGCTGAGATAAATGCTCCTATTATTACAGCTCATTTCAAGGATGCAAATGTGGAGTTGCAGCCATTGAACACATTCATGAGAATGCAGGAGGATCTGGTTTGCTTTACAGTGGCGCCTACTTCTGATATTGGGGTCTTGGGGAACTTGGCTCAGGTGAATTTCTTGGTAGGGTTTGATCTCAGGAAGAAGAGGGGTTTTTCGAAGAAGGCTGAAGTTGAAGAGGGAAACATTATCGTTGATTCGGGGACAACATATACCTATCTCCCCCTGGAGTTTTACGTCAAGTTGGAGGAATCTGTAGCACACTCCATTAAAGGGAAACGAGTCAGAGACCCGAATGGGATTTCCAGTCTGTGCTATAACACTACAGTTGATCAGATAGATGCTCCCATTATTACAGCTCATTTCAAGGATGCAAATGTGGAGTTGCAGCCATGGAACACATTCCTGAGAATGCAGGAAGATCTGGTTTGCTTTACAGTGTTGCCCACTTCTGATATTGGGATCTTGGGGAACTTGGCTCAGGTGAATTTCCTGGTAGGGTTTGATCTCAGGAAGAAGAGGGTCTCTTTCAAGGCTGCTGATTGCACCCTGCATTAG 1629 48.74 MEGFGVKIFFNVVVVGFLFQLLEVALARGGGFSVDLIHRDSPHSPFFDPSKTQAERLTDAFRRSVSRVGRFRPTAMTSDGIQSRIVPSAGEYLMNLYIGTPPVPVIAIVDTGSDLTWTQCRPCTHCYKQVVPLFDPKNSSTYRDSSCGTSFCLALGKDRSCSKEKKCTFRYSYADGSFTGGNLASETLTVDSTAGKPVSFPGFAFGCGHSSGGIFDKSSSGIVGLGGGELSLISQLKSTINGLFSYCLLPVSTDSSISSRINFGASGRVSGYGTVSTPLRLPYKGYSKKTEVEEGNIIVDSGTTYTFLPQEFYSKLEKSVANSIKGKRVRDPNGIFSLCYNTTAEINAPIITAHFKDANVELQPLNTFMRMQEDLVCFTVAPTSDIGVLGNLAQVNFLVGFDLRKKRGFSKKAEVEEGNIIVDSGTTYTYLPLEFYVKLEESVAHSIKGKRVRDPNGISSLCYNTTVDQIDAPIITAHFKDANVELQPWNTFLRMQEDLVCFTVLPTSDIGILGNLAQVNFLVGFDLRKKRVSFKAADCTLH* 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17439360 17448268 - Vvi2g926 Vvi2g926 783625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g926 542 SUPERFAMILY Acid proteases 85 407 IPR021109 -
Vvi2g926 542 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 297 308 IPR001969 GO:0004190|GO:0006508
Vvi2g926 542 SUPERFAMILY Acid proteases 416 539 IPR021109 -
Vvi2g926 542 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 107 118 IPR001969 GO:0004190|GO:0006508
Vvi2g926 542 ProSiteProfiles Peptidase family A1 domain profile. 92 411 IPR033121 -
Vvi2g926 542 Gene3D Acid Proteases 413 541 IPR021109 -
Vvi2g926 542 ProSiteProfiles Peptidase family A1 domain profile. 419 535 IPR033121 -
Vvi2g926 542 Pfam Xylanase inhibitor N-terminal 92 264 IPR032861 -
Vvi2g926 542 PANTHER OS07G0603500 PROTEIN-RELATED 33 407 - -
Vvi2g926 542 PANTHER OS07G0603500 PROTEIN-RELATED 410 540 - -
Vvi2g926 542 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 420 431 IPR001969 GO:0004190|GO:0006508
Vvi2g926 542 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 410 540 - -
Vvi2g926 542 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 33 407 - -
Vvi2g926 542 Pfam Xylanase inhibitor C-terminal 288 407 IPR032799 -
Vvi2g926 542 Pfam Xylanase inhibitor C-terminal 414 535 IPR032799 -
Vvi2g926 542 Gene3D Acid Proteases 275 412 IPR021109 -
Vvi2g926 542 CDD pepsin_A_like_plant 91 409 IPR034161 -
Vvi2g926 542 Gene3D Acid Proteases 74 264 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g926 - - - vvi:100240764 803.512
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g926 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe01g00531 . . . . . . . . . . . . . . . . Csa04g00695 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001425 8 2 3 3 3 2 0 2 2 2 1 2 4 2 1 7 2 3 4 2 2 4 2 1 1 2 1 3 1 2 74