Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g927 ATGAACTTGAATACAAAAGTAATCAAATTCTCCTCAAATTCCAAGATCATTCAGGGTGGTGACTGTTGCAGAATCTGCACTCTGGCTGTTCGACCTTTTGTCTCAATGAAGTCTCTCTGCACCATGTTCTTGGGATTACATCAATCTCTTGAATCATGTCATAGTAAAAATGGTGTTTTTGCATTGATGGGGAGAAACTCAGTTCAGAGATTGGGTTCGGTGTGGGTGCAGATCATGCATATATCAAGTGGAGGAAGAAGACCCAAGAAGAAAATCTACCACAGAGTCCATGAACTTGATAGAGTGATGGACTTGAAGAAGAAGCCATGCTTGATTCTGCAGCTCAAGTCCATCATCCAGAGCCAAAAGCACCAGTCTCTGCTTCTGAGGGACCTCGAAAAACAAGTGGGTTTTGTTCATAAATGGAATTTCATGGCTGTCATTGAGAAGTATCCTTCAATATTCCGTGTCAATGGAGGTAATAGAACGCCCCCTTCTGTTGAGCTCACTGAAAAGGCCAAAAGGATTGCTGATGAAGAAACTGAAGCTAGAAAGCAAATGGAGCCCATTTTGGTTGAGAATCTTAGGAAGCTTTTGATGATGTCTGTTGATTGCCGTGTGCCGCTTGAAAATATTGAATTTATCGAATCTGAACTGGGTTTGCCTCAAGATTTCAAGGAGACGTTGATTCCAAAGTACCCGGAATTTTTTTCAGTGAAGGATTTCAATGGGAGGGCCTATCTTCAATTGGAAAATTGGGATTCTTCGCTGGCAGTCACTGCCCGCGAGAAAAGGTTTGCACGTGAAAGAGTTCTAGACTCTGTTGGGCATGCCAGAAAGGCTAGAGTCTCGAAGGATGGTAACTTCTCTGGTCCGTATGCCTTTCTCATGAGTTATCCTGCCGGGTTTAGACCAAACATGAGTTATCTGGAAGAAGTCCAAAGGTGGCAGAAAATGGAGTTCCCTTCTCCATACTTGAATGCGAGGAGATTTGAAGCTGCAGATCCAAAAGCTCGGAAACGAGTTGTGGCAGTGCTTCATGAGCTCCTCAGTTTGACTATGGAGAAGAGGATGACATCTGCACAATTGGATGCATTTCATTCTGAGTTTCTGTTGCCCGCTAGATTGCTGCTTTGTTTGATTAAGCATCATGGTATCTTTTATATCACAAACAAAGGTGCAAGGAGTACCGTATTTCTTAAAGAAGCTTATGATGGATCAAATTTGATAGAAAAATCTCCTCTGCTCGGATTTAATAATAAATTTGTAGCACTTAGTGGTAGGAGAGAGAGCACATTGTGCAATGGAATTTCTTCATCTCATATTGTTACATAA 1335 41.95 MNLNTKVIKFSSNSKIIQGGDCCRICTLAVRPFVSMKSLCTMFLGLHQSLESCHSKNGVFALMGRNSVQRLGSVWVQIMHISSGGRRPKKKIYHRVHELDRVMDLKKKPCLILQLKSIIQSQKHQSLLLRDLEKQVGFVHKWNFMAVIEKYPSIFRVNGGNRTPPSVELTEKAKRIADEETEARKQMEPILVENLRKLLMMSVDCRVPLENIEFIESELGLPQDFKETLIPKYPEFFSVKDFNGRAYLQLENWDSSLAVTAREKRFARERVLDSVGHARKARVSKDGNFSGPYAFLMSYPAGFRPNMSYLEEVQRWQKMEFPSPYLNARRFEAADPKARKRVVAVLHELLSLTMEKRMTSAQLDAFHSEFLLPARLLLCLIKHHGIFYITNKGARSTVFLKEAYDGSNLIEKSPLLGFNNKFVALSGRRESTLCNGISSSHIVT* 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17478429 17482898 - Vvi2g927 Vvi2g927 783626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g927 444 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 72 433 IPR045040 GO:0003723
Vvi2g927 444 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN 72 433 - -
Vvi2g927 444 Pfam Plant organelle RNA recognition domain 94 429 IPR021099 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g927 - - - vvi:100256382 816.994
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g927 . . . Bda08g00656 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010977 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 31