Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g928 ATGAAAGAGAGCAAGCCATGGAGGCCATTCACAGCAAACTGCTGTTCAGCAGAAGACCACACAGTTCTGGGAAACTTCAGCCGCTGCAGGCCATCTAGATCGGAATTCTCCAAGAACATAGCTCCATTACCATCTTTTCGCCGCTTGTCGTTCTCCGATCTCAGCCGCTCTTCATCAACCCGAGTTAATGAAGACTTGGCACAATCTTTCGGTCCTGAATTGCATGATTTTCAGCTGAGTGAGCTGCGTGCGATTACGCAGAATTTTTCAAGTAATTTCTTTCTGGGAGAAGGAGGGTTTGGGACAGTGCATAAGGGTTATATTGATGAGAACTTAAGGCAAGGGTTGAAGGCTCAGGCTGTAGCTGTTAAGCTCTTGGATATTGAAGGCCTACAGGGGCATAGAGAATGGCTTGCTGAAGTAATATTTCTTGGGCAGCTTAGGCATCCAAATCTGGTAAAATTAATCGGGTATTGTTGTGAAGACGATGAGCGTCTCCTTGTGTATGAGTTCATGCCTAGAGGCAGCCTAGAGAATCACTTGTTCAAGAGGTTATCAGTGTCATTGCCATGGGGCACCAGGCTGAAGATCGCAGTAGGAGCAGCAAAAGGGCTCGCGTTCTTGCATGGTGCTGAGCAGCCTGTTATATATCGCGACTTCAAGACTTCCAATGTGTTGCTAGATTCTGATTTTACTGCAAAATTGTCGGATTTTGGACTTGCAAAGATGGGGCCTGAAGGATCAAAATCTCACGTTACTACCCGGGTAATGGGCACATTTGGATACGCTGCCCCGGAATATGTCTCAACAGGTCATTTAACAACTAAAAGCGATGTTTATAGCTTTGGAGTCGTGCTACTAGAAATGCTAACAGGAAGAAGATCAATGGATAAATCAAGACCCAAAAATGAGCAAAACCTTGTGGATTGGACAAAACCCTACTTGACTAGTAGCCGGAGGTTGCGCTACATAATGGACCCAAGACTTGCTGGTCAGTACTCGGTGAAAGGAGCGAAGGAGATCGCCCTCTTGGCATTACAATGCATAAGTTCAAACCCTAAAGACAGGCCGAGGATGCCCGGTGTAGTCGAAACCCTAGAAGGTCTGCAACATTTGAGGGACATGGCTGTCACTTGTGGGCAATGGCCAGCAACACCAAAATCTACAAGAAATGGAGCTGCTGTCAAAGGAAGGAGGGAGAATAATAGAGTTGGGACTCAATGTAAATCCACTCCTATTGCTCCCAAACCAGAAAAGCTAAGTAAGGGGACCTAA 1275 46.2 MKESKPWRPFTANCCSAEDHTVLGNFSRCRPSRSEFSKNIAPLPSFRRLSFSDLSRSSSTRVNEDLAQSFGPELHDFQLSELRAITQNFSSNFFLGEGGFGTVHKGYIDENLRQGLKAQAVAVKLLDIEGLQGHREWLAEVIFLGQLRHPNLVKLIGYCCEDDERLLVYEFMPRGSLENHLFKRLSVSLPWGTRLKIAVGAAKGLAFLHGAEQPVIYRDFKTSNVLLDSDFTAKLSDFGLAKMGPEGSKSHVTTRVMGTFGYAAPEYVSTGHLTTKSDVYSFGVVLLEMLTGRRSMDKSRPKNEQNLVDWTKPYLTSSRRLRYIMDPRLAGQYSVKGAKEIALLALQCISSNPKDRPRMPGVVETLEGLQHLRDMAVTCGQWPATPKSTRNGAAVKGRRENNRVGTQCKSTPIAPKPEKLSKGT* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17515271 17517964 + Vvi2g928 Vvi2g928 783627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g928 424 ProSitePatterns Protein kinases ATP-binding region signature. 95 124 IPR017441 GO:0005524
Vvi2g928 424 Pfam Protein tyrosine and serine/threonine kinase 95 366 IPR001245 GO:0004672|GO:0006468
Vvi2g928 424 CDD STKc_IRAK 95 369 - -
Vvi2g928 424 PANTHER SERINE/THREONINE-PROTEIN KINASE, ACTIVE SITE PROTEIN-RELATED 28 415 - -
Vvi2g928 424 Gene3D Transferase(Phosphotransferase) domain 1 172 380 - -
Vvi2g928 424 PANTHER OS01G0588500 PROTEIN-RELATED 28 415 - -
Vvi2g928 424 MobiDBLite consensus disorder prediction 383 424 - -
Vvi2g928 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Vvi2g928 424 ProSiteProfiles Protein kinase domain profile. 89 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g928 424 SUPERFAMILY Protein kinase-like (PK-like) 68 369 IPR011009 -
Vvi2g928 424 Gene3D Phosphorylase Kinase; domain 1 51 171 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76551 PF07714 PK_Tyr_Ser-Thr 3.40E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g928 - - vvi:100252865 836.639