Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g93 ATGGGTGAGACTCTCCGGACTGTTTTCTGTGGAAGCTCCGGATGTTGGAGTAAAATTGGAAAGATATGCAGTTCTGGGTTCCTAGCCATCATCTGTCCATGTTCATGTCTCAATCATATTTTGGTCATTTCTGTTGACATCATCCTCTTGTTCTTCTTATTATTGATCCTCATATATAAACCATCAGCTACGAAGATCTTATCCCCTCAACAGTCTCTAAGCTTTTCCACAATGCTAAATTATGCGGCCTTTCTTAATGGTAGTTTGGGGTTGGTTTATCTGGGTTTGGGGTTCTGGATTGTGGGAGAGAAGCTGATTGAAGAGAACACCATTCTACATTTGCATGGTTGGTTAATGGTTTTATTACAAGGCTTCACCTGGTTTTTTCTGGGTTTAGCTGTGAGGTTTAAAAGGCATCAACTTCCACATATTGCAGGGCTGAGGCTCTGTTCAGTACTTGCATTCTTTATTGCAGGTTTTCACTGCGTTACATCTTTCTGGGAAGCTATTGTGGGTGATGCAGTATCATTCAAGATGATTTTAGATGTCATGTCTTTTCCCGGAGCGATTCTATTGATGTTCTGCACTTTTTCGGGACCAAAATATGCCGGAGCTGATTCAGAAATTGATGGTGCTGCCTTCTACGCACCTTTGCCTGGTGAAGGAGGCAGTGGTGGTGATAAAATCAATTCAGATGCCAGCTTACCTCCTTTCGAGAAGGCGGGGCTTATTAGTAGACTGTCATTTTGGTGGTTGAATTCGTTGATGAAGAAGGGTAAGGAGAAAACTCTTGAGGACAAAGACATTCCACAACTAAGAAGGGAAGATCGAGCGGAAATGTGTTACTTGATGTTCATAGAACAGCAGAACAAGCAGAAAAAGAAGCAGTCACTCGACTCTCCTTCCATTTTGTCGACTATATTGTTGTGGCAGTGGAAACAGATTTTGATTTCTGGCTTCTTTGCATTGATGAAGGTGCTAACACTTTCTATTGGGCCTCTGTTTCTTAGAGCCTTCATCCTGCAGCTCGAGGAATCCATTTTTATCAAGAGCAACAGAATTTCATGGGAGGATAACTCTACAAGGGCTACGCTAAGGAACATAAATTTGGTGGTTAAGCCTGGGGAAAAGGTAGCTATTTGTGGAGAGGTTGGCTCAGGTAAATCAACACTATTAGCTGCACTTCTTGGAGAAGTTCCACACGTTGATGGCATAGTTCGAGTCTATGGAAAGATTGCTTACGTCTCCCAGACAGCATGGATTCCAACAGGGACCATACAAGAAAATATTTTGTTTGGGTCTGCTATGGATCCTTACAGATACAGAGAGGCTATTGAGAAGTGTGCCCTAGTGAAGGACCTTGAGATGCTTCCATTCGGCGATCTCACTGAAATAGGAGAAAGAGGTGTTAATCTGAGTGGTGGACAGAAGCAGCGGGTTCAACTGGCACGTGCATTATATCAGGATGCAGATGTGTATCTCCTGGATGATCCATTTAGTGCGGTTGATGCCCATACTGCAACCAATCTATTTAATGAATATGTCATGGGAGCTCTATCAATGAAGACGGTCATACTTGTGACCCACCAAGTGGACTTCCTCCCTGCATTCGATTTGGTTTTGTTAATGTCCGAAGGGGAGATCCTGCAAGCTGCTACCTATGACCAGCTGATGCACTCTAGTCAAGAGTTCCAGGACCTTGTCAATGCACACAATGCCATGGTTGGTTCTGAGAGGCAACCTGAGCACGATTCTACCCAGAAATCTAAAATTCGGAAGGGAGAGATACAGAAGATTTACACTGAAAAACAGTTAAGAGAAACATCCGGAGAACAGTTAATTAAGAAAGAAGAAAGAGAAATGGGAGACACTGGTCTGAAGCCTTACCTACAGTACTTGGAATACAGCAAGGGATTCTTGTACTTCTTTTTGTCAACTCTATCTCATGTCATATTCGTTGTTGGGCAGTTGGTGCAAAACTATTGGTTGGCTGCAAATGTCCAGAATTTTAGTGTTAGCCAATTGAAACTGATTGCAGTATACACAGGGATCGGATTAAGTTTGTCATTCTTTTCGTCGCTCCGGTCTTTTTTCGTTGTTCTTTTAGGCCTTGGGGCATCGCAGTCTATTTTTTCTACACTGCTGAGCTCTTTTTTTCGAGCACCAATGTCCTTTTATGACTCAACACCTCTGGGAAGGATACTCAGTCGGGTATCCTCTGATTTGAGTGTGGTTGACCTTGATGTGGCCTTCAAATTTAGTTTTGCTGTTGGGGCAGCTATTAATACTTATGCCAGTTTTGGAGTGTTGGCTATTCTTGCCTGGGAATTTGTGTTTGTCATTTTACCAACAATTTATCTTAGTATACTCATCCAGAGGTACTACCTTGCTACTGGAAAAGAGTTGATGCGAATCAATGGCACAACTAAGTCTTTCGTTGCAAGCCATCTTGCTGAGTCCATTGCTGGTGCTATGACAATTAGAGCTTTCGGGGAGGAAGATAGACACTTTTCAAAGAATTTGGACTTCATTGACATAAATGCAAGTCCATTCTTCTATAATTTCACAGCAAATGAGTGGTTGATCCAACGCCTTGAAATACTATGTGCAATCGTTCTCTCATCTTCAGCCCTTGCCCTAACTTCTCTTCATACGAGTGCTTCTAAATCTGGATTTATTGGAATGGCATTATCGTATGGTCTTTCAATGAATGTATTCCTTGTGTTTTCCGTCCAAAACCAGTGCCATTTAGCAAATATGATTGTTTCTGTTGAAAGATTAGAACAGTACACGAATATTCCTAGCGAAGCCCCAGAAGTCATAGAGAGTAATCGACCACCAGTCAGTTGGCCTGCTATTGGTGAAGTGGAAATTTATGATTTGAAGGTCAGGTATAGGCTCAATGCTCCTCTAGTTCTTCAAGGAATTAGTTGCAAATTTGGAGGAGGACAGAAAATTGGGATCGTTGGCCGGACTGGTAGTGGAAAGACAACTCTTATCAGCGCTTTGTTTCGTTTGGTAGAGCCTACAGAGGGACAGATAATTATAGATGGCATAAATATTTCCACAATTGGGCTACATGATCTCAGATCACGTCTTGGGATCATTCCACAAGAACCAACTCTTTTTAGCGGGTCTATAAGATGCAATCTTGACCCTTTATCACTGCATACTGATGAAGAAATATGGGAGGTTCTGGAAAAATGTCAACTTCGAGGGGCTGTTCAAGAGAAAAAAGAGGGCCTGGACTCCTTAGTTGTACTAGACGGATCAAATTGGAGCATGGGCCAGAGACAATTATTCTGTTTGGGACGTGCTCTACTGAAGAGAAGTCGGATACTAGTGCTTGATGAAGCCACTGCATCTATAGACAATGCAACAGACTCCATTCTCCAGAAGACCATAAGAACAGAATTTGCAGACTGCACTGTAATAACAGTAGCCCACAGAATCCCAACTGTGATGGACTGCACAATGGTGCTTGCTATCAGTGATGGAAAATTGGTAGAGTACGATGAGCCGATGAAGCTGATAAAGAAGGAGGGATCGCTGTTTGGGCAGCTTGTCAAGGAGTACTGGTCTCACTCTTCAAATGGCAGTAACACCTCGGGAGATTGGCTCTGA 3624 42.69 MGETLRTVFCGSSGCWSKIGKICSSGFLAIICPCSCLNHILVISVDIILLFFLLLILIYKPSATKILSPQQSLSFSTMLNYAAFLNGSLGLVYLGLGFWIVGEKLIEENTILHLHGWLMVLLQGFTWFFLGLAVRFKRHQLPHIAGLRLCSVLAFFIAGFHCVTSFWEAIVGDAVSFKMILDVMSFPGAILLMFCTFSGPKYAGADSEIDGAAFYAPLPGEGGSGGDKINSDASLPPFEKAGLISRLSFWWLNSLMKKGKEKTLEDKDIPQLRREDRAEMCYLMFIEQQNKQKKKQSLDSPSILSTILLWQWKQILISGFFALMKVLTLSIGPLFLRAFILQLEESIFIKSNRISWEDNSTRATLRNINLVVKPGEKVAICGEVGSGKSTLLAALLGEVPHVDGIVRVYGKIAYVSQTAWIPTGTIQENILFGSAMDPYRYREAIEKCALVKDLEMLPFGDLTEIGERGVNLSGGQKQRVQLARALYQDADVYLLDDPFSAVDAHTATNLFNEYVMGALSMKTVILVTHQVDFLPAFDLVLLMSEGEILQAATYDQLMHSSQEFQDLVNAHNAMVGSERQPEHDSTQKSKIRKGEIQKIYTEKQLRETSGEQLIKKEEREMGDTGLKPYLQYLEYSKGFLYFFLSTLSHVIFVVGQLVQNYWLAANVQNFSVSQLKLIAVYTGIGLSLSFFSSLRSFFVVLLGLGASQSIFSTLLSSFFRAPMSFYDSTPLGRILSRVSSDLSVVDLDVAFKFSFAVGAAINTYASFGVLAILAWEFVFVILPTIYLSILIQRYYLATGKELMRINGTTKSFVASHLAESIAGAMTIRAFGEEDRHFSKNLDFIDINASPFFYNFTANEWLIQRLEILCAIVLSSSALALTSLHTSASKSGFIGMALSYGLSMNVFLVFSVQNQCHLANMIVSVERLEQYTNIPSEAPEVIESNRPPVSWPAIGEVEIYDLKVRYRLNAPLVLQGISCKFGGGQKIGIVGRTGSGKTTLISALFRLVEPTEGQIIIDGINISTIGLHDLRSRLGIIPQEPTLFSGSIRCNLDPLSLHTDEEIWEVLEKCQLRGAVQEKKEGLDSLVVLDGSNWSMGQRQLFCLGRALLKRSRILVLDEATASIDNATDSILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGKLVEYDEPMKLIKKEGSLFGQLVKEYWSHSSNGSNTSGDWL* 1208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 952857 960480 - Vvi2g93 Vvi2g93 782792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g93 1207 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 956 1190 IPR003439 GO:0005524
Vvi2g93 1207 PANTHER ABC TRANSPORTER C FAMILY MEMBER 10-LIKE 343 1206 - -
Vvi2g93 1207 PANTHER ABC TRANSPORTER C FAMILY MEMBER 10-LIKE 109 341 - -
Vvi2g93 1207 Pfam ABC transporter 365 499 IPR003439 GO:0005524
Vvi2g93 1207 Pfam ABC transporter 973 1121 IPR003439 GO:0005524
Vvi2g93 1207 SMART AAA_5 982 1174 IPR003593 -
Vvi2g93 1207 SMART AAA_5 374 547 IPR003593 -
Vvi2g93 1207 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 650 873 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi2g93 1207 CDD ABC_6TM_ABCC_D2 638 931 IPR044726 GO:0140359
Vvi2g93 1207 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 343 1206 - -
Vvi2g93 1207 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 109 341 - -
Vvi2g93 1207 Gene3D - 341 597 IPR027417 -
Vvi2g93 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 570 IPR027417 -
Vvi2g93 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 946 1183 IPR027417 -
Vvi2g93 1207 SUPERFAMILY ABC transporter transmembrane region 669 936 IPR036640 GO:0005524|GO:0016021
Vvi2g93 1207 Pfam ABC transporter transmembrane region 639 886 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi2g93 1207 CDD ABCC_MRP_domain2 954 1174 - -
Vvi2g93 1207 ProSitePatterns ABC transporters family signature. 472 486 IPR017871 GO:0005524
Vvi2g93 1207 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 349 570 IPR003439 GO:0005524
Vvi2g93 1207 CDD ABCC_MRP_domain1 354 547 - -
Vvi2g93 1207 Gene3D ABC transporter type 1, transmembrane domain 603 937 IPR036640 GO:0005524|GO:0016021
Vvi2g93 1207 Gene3D - 940 1191 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g93 K05666 ABCC2; ATP-binding cassette, subfamily C (CFTR/MRP), member 2 - vvi:100243221 1636.31
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g93 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g01915 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48