Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g934 ATGGATTTGAGAATAACCCTCCTCCCAAAACCCACACCAATCTTCTGCCCAATCGCACGCCCCCTTACCTGTGTCACCTCCGCCGCCCCACATCCACCGTCGCCATTGCCGTCCCAGAATCAGCCTCCTTCTTCGGATCATGCTCTTCTCAAATCGGTAACTTCAATTCTCTCAAACCCATCTCTGGATTCCACTCAGTGTAAACAACTCATACCCCATTTGTCTCCTCATCAATTCGATTCTGTATTCTTCTCCGTAAGACGTAATGTTAACCCCAAAACTGCTTTGAATTTCTTTTATTTTGCTTCTGATTCATGTGGGTTTCGATTCACTCTTCGATCATACTGTGTTTTGATGCGTAGTTTGATTGTTTCGGGCTTTGTCTCTCCCGCTAGGCTGCTTTTGATCCGTTTAATCGATCGGAAGCTGCCCGTTTTGTTCGGGGACCCGAAAAATAGGCACATTGAGATAGCCAGTGCAATGGCGGATTTGAATGAGGTGGGCGAGTCGGGTGTTGCGGTTGCGGCAGTTGATTTGTTGATTCATGTCTATTGTACCCAATTCAGGAATGTGGGTTTCCGGAATGCTATTGGCGTTTTCCGGTTTTTGGCTAATAAGGGTGTGTTTCCAACTGTGAAGACTTGTACCTTTTTGCTGAGTTCTTTAGTTAAGGCGAATGAACTTGAAAAGAGTTATTGGGTGTTTGAGACTATGCGCCAAGGTGTTTCTCCAGATGTTTACTTGTTTAGCACTGCAATTAATGCCTTTTGTAAGGGAGGGAAGGTTGAGGATGCTATTCAGTTGTTTTTTGACATGGAGAAGTTGGGTGTTTCTCCGAATGTTGTTACATATAATAATCTTATTCATGGTTTATGCAAGCATGGGAATTTAGATGAGGCTTTTCGATTCAAGGAGAAAATGGTGAAAGATGGCGTGAATGCTACTCTTATAACTTACAGTGTTCTTATTAATGGTTTGATGAAATTGGAAAAGTTTAATGAAGCAAATTCTGTTTTGAAGGAAACGTTGGAAAAGGGGTTTACACCGAATGAGGTTGTTTATAACACATTGATTGATGGATACTGTAAAATGGGAAACCTTGGGGATGCATTGAGGATAAGGGGTGATATGGTCTCCAAGGGAATCAACCCCAATTCAGTTACTCTTAATTCAATCATCCAGGGATTTTGCAAGATTGGGCAGATGGAACAAGCTGAGTGCATTTTGGAGGAGATGCTATCGAGAGGATTCTCTATAAACCCTGGTGCTTTTACTACGATTATTCACTGGTTATGTATGAATTCTAGGTTTGAGTCTGCACTAAGATTCCTCAGGGAGATGCTATTAAGAAATATGAGACCCAATGATGGGTTGCTGACCACATTGGTGGGTGGGCTTTGTAAGGAGGGTAAGCACTCAGATGCAGTGGAACTTTGGTTTAGGCTCTTGGAGAAAGGCTTTGGAGCCAATTTAGTGACCACAAATGCTCTAATTCATGGACTTTGCAAAACGGGTAATATGCAAGAGGCTGTTAGGCTTCTCAAGAAGATGTTAGAAAGGGGTTTCGTATTGGATAAGATCACATACAACACACTCATCTCAGGGTGTTGCAAGGAGGGAAAGGTTGAGGAAGGTTTTAAATTGAGGGGAGAAATGGTTAAGCAAGGAATTGAACCAGACACTTTTACTTACAATTTGCTGATACACGGGATGTGTCGTATTGGTAAATTGGACGAAGCTGTGAACCTTTGGAATGAATGTAAAAGTAGAGATCTAGTTCCAAATGTTTATACATATGGTGTCATGATTGATGGATATTGTAAGGCTGACAAAATTGAGGAGGGAGAAAAACTCTTCACTGAGTTGCTCACTCAGAATTTGGAACTGAATTCTGTTGTTTATAATACACTTATCAGAGCATACTGTCGAAATGGGAATACAGTGGAGGCCTTTAAACTTCATGATGACATGAGAAGCAAGGGTATTCCACCAACTACAGCCACATATTCTTCTCTAATACATGGAATGTGCAATATTGGACGCATGGAGGATGCAAAATGCCTTATTGATGAAATGAGAAAGGAGGGTTTGCTTCCAAATGTTGTCTGTTATACTGCACTAATTGGTGGTTACTGTAAGCTAGGTCAGATGGATAAAGTGGTGAATGTCTTGCAGGAAATGTCTTCATATGACATACACCCTAATAAAATTACGTATACTGTCATGATTGATGGATATTCCAAATCAGGTGATATGAAAACAGCAGCTAAGCTTCTACATGAAATGGTAGGAAAAGGAATTGTCCCAGACACTGTCACTTATAATGTCTTGACAAATGGGTTTTGCAAGGAAGGGAAGATAGAAGAAGGTTTTAAAATATGTGATTATATGTCCCAGGAAGGGTTACCTTTAGATGAAATTACATATACTACTTTGGTTCATGGGTGGCAACAACCATCAGCATTAACAAATCAAGAGTGA 2481 40.91 MDLRITLLPKPTPIFCPIARPLTCVTSAAPHPPSPLPSQNQPPSSDHALLKSVTSILSNPSLDSTQCKQLIPHLSPHQFDSVFFSVRRNVNPKTALNFFYFASDSCGFRFTLRSYCVLMRSLIVSGFVSPARLLLIRLIDRKLPVLFGDPKNRHIEIASAMADLNEVGESGVAVAAVDLLIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHGWQQPSALTNQE* 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17631655 17646964 - Vvi2g934 Vvi2g934 783633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g934 826 TIGRFAM PPR: pentatricopeptide repeat domain 248 281 IPR002885 -
Vvi2g934 826 TIGRFAM PPR: pentatricopeptide repeat domain 460 489 IPR002885 -
Vvi2g934 826 TIGRFAM PPR: pentatricopeptide repeat domain 562 596 IPR002885 -
Vvi2g934 826 TIGRFAM PPR: pentatricopeptide repeat domain 702 735 IPR002885 -
Vvi2g934 826 TIGRFAM PPR: pentatricopeptide repeat domain 527 561 IPR002885 -
Vvi2g934 826 TIGRFAM PPR: pentatricopeptide repeat domain 352 385 IPR002885 -
Vvi2g934 826 TIGRFAM PPR: pentatricopeptide repeat domain 317 351 IPR002885 -
Vvi2g934 826 TIGRFAM PPR: pentatricopeptide repeat domain 282 313 IPR002885 -
Vvi2g934 826 TIGRFAM PPR: pentatricopeptide repeat domain 492 525 IPR002885 -
Vvi2g934 826 TIGRFAM PPR: pentatricopeptide repeat domain 737 771 IPR002885 -
Vvi2g934 826 TIGRFAM PPR: pentatricopeptide repeat domain 424 455 IPR002885 -
Vvi2g934 826 TIGRFAM PPR: pentatricopeptide repeat domain 597 630 IPR002885 -
Vvi2g934 826 TIGRFAM PPR: pentatricopeptide repeat domain 772 805 IPR002885 -
Vvi2g934 826 TIGRFAM PPR: pentatricopeptide repeat domain 668 701 IPR002885 -
Vvi2g934 826 TIGRFAM PPR: pentatricopeptide repeat domain 632 665 IPR002885 -
Vvi2g934 826 TIGRFAM PPR: pentatricopeptide repeat domain 387 420 IPR002885 -
Vvi2g934 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 665 699 IPR002885 -
Vvi2g934 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Vvi2g934 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Vvi2g934 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Vvi2g934 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Vvi2g934 826 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 7 811 - -
Vvi2g934 826 Gene3D Tetratricopeptide repeat domain 624 693 IPR011990 GO:0005515
Vvi2g934 826 Gene3D Tetratricopeptide repeat domain 551 623 IPR011990 GO:0005515
Vvi2g934 826 Gene3D Tetratricopeptide repeat domain 764 822 IPR011990 GO:0005515
Vvi2g934 826 Gene3D Tetratricopeptide repeat domain 694 763 IPR011990 GO:0005515
Vvi2g934 826 Gene3D Tetratricopeptide repeat domain 344 412 IPR011990 GO:0005515
Vvi2g934 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Vvi2g934 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 735 769 IPR002885 -
Vvi2g934 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Vvi2g934 826 Pfam PPR repeat 591 621 IPR002885 -
Vvi2g934 826 Pfam PPR repeat 241 273 IPR002885 -
Vvi2g934 826 SUPERFAMILY HCP-like 561 793 - -
Vvi2g934 826 Pfam PPR repeat 460 487 IPR002885 -
Vvi2g934 826 Pfam PPR repeat 492 522 IPR002885 -
Vvi2g934 826 Pfam PPR repeat 423 451 IPR002885 -
Vvi2g934 826 Pfam PPR repeat 214 240 IPR002885 -
Vvi2g934 826 Pfam PPR repeat family 699 748 IPR002885 -
Vvi2g934 826 Pfam PPR repeat family 526 573 IPR002885 -
Vvi2g934 826 Pfam PPR repeat family 769 815 IPR002885 -
Vvi2g934 826 Pfam PPR repeat family 279 328 IPR002885 -
Vvi2g934 826 Pfam PPR repeat family 630 678 IPR002885 -
Vvi2g934 826 Pfam PPR repeat family 349 398 IPR002885 -
Vvi2g934 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 560 594 IPR002885 -
Vvi2g934 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 630 664 IPR002885 -
Vvi2g934 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 770 804 IPR002885 -
Vvi2g934 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Vvi2g934 826 Gene3D Tetratricopeptide repeat domain 240 343 IPR011990 GO:0005515
Vvi2g934 826 Gene3D Tetratricopeptide repeat domain 50 239 IPR011990 GO:0005515
Vvi2g934 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 595 629 IPR002885 -
Vvi2g934 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Vvi2g934 826 SUPERFAMILY TPR-like 213 445 IPR011990 GO:0005515
Vvi2g934 826 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 7 811 - -
Vvi2g934 826 Gene3D Tetratricopeptide repeat domain 413 550 IPR011990 GO:0005515
Vvi2g934 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 700 734 IPR002885 -
Vvi2g934 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g934 - - - vvi:100240858 1635.54
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g934 . . . . . . . . . Cmo16g00562 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007305 0 5 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 37