Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g936 ATGCTACTCAAGGGAGGTGTTTTTGTGCTCCCTCGCTTCTCTCCTTCTTTCTCCATCTCAAGCAGGATTCGTTTGAGCAAAATGAGCACTGCAGCTGCACCGATAATCCCAAAATTCATTTCTGTGGAAGGGGTTGATATTAATTCAAGAAGTATCCCTGATGGCTTCAGATTCAGTCTTGTCTCTTATAACATTTTGGCACAGGTTTATGTGAAGAGTTCTCTGTTTCCGCACTCTCCATCCCCTTGTCTCAAGTGGAAAGCTCGTTCCCAGGCCATTTTGACCGTTCTGAGGAACCTTGGGGCTGACTTCCTCTGCCTACAGGAAGTAGATGAGTATGATAGCTTCTATAAAGGAAATATGGACAGCAATGGCTATTCAAGTATCTATGTTCAGAGAAGTGGGCAGAAACATGATGGTTGTGGGATTTTCTATAAGCACAATAGTGCAGAGCTGGTCCTTGAGGAGAAAATAGAATACAATGATCTTGTAGACTTGAATGATGATGGTTCATATAGCAATGATAGGCATTGTGATACACCAGCAAGTGCAAATAGTGATGCTGAACCAAAAAAAGGTTCATCACCACAGAACACTACAGAGGAGCGAGGGGATCCTAATGATCCTCGTGTGAGATTGAAGCGTGATTGTGTTGGAATCATGGCTGCATTCAGGCTTAAAGATCCTTCTCATCATCTTGTTATCGTGGCAAACACTCACCTTTATTGGGATCCAGAATGGGCTGATGTCAAGCTTGCGCAAGCTAAATATCTTCTGTCACGCTTAGCTCAATTTAAAACAGTAGTGTCAGACAAATTTGAATGTACGCCTTCTGTACTCGTAGCTGGTGATTTCAATTCAACCCCAGGGGATAAGGTCTACCAGTACCTTGTTTCGGGCAACTCGTCAGTGCCACAGCTGGAATGTTTGGACGGGCTTCCTATTCCCTTATGCAGCGTATACGATTTCACAAGAGGAGAACCACCATTCACAAACTGCACTCCTGACTTCACCAATACTCTTGATTATATATTCTTTTCCCCTTCTGGCCACATCAAACCAGTCAGCTTCCTTGAACTCCCGGAACCAGATTCTTCTGATGTAGCTGGTGGACTACCAAACCACCACCACCCAAGTGATCATCTACCAATTGGTGCTGAATTCAAAGTTACCGGGGAATAG 1182 44.08 MLLKGGVFVLPRFSPSFSISSRIRLSKMSTAAAPIIPKFISVEGVDINSRSIPDGFRFSLVSYNILAQVYVKSSLFPHSPSPCLKWKARSQAILTVLRNLGADFLCLQEVDEYDSFYKGNMDSNGYSSIYVQRSGQKHDGCGIFYKHNSAELVLEEKIEYNDLVDLNDDGSYSNDRHCDTPASANSDAEPKKGSSPQNTTEERGDPNDPRVRLKRDCVGIMAAFRLKDPSHHLVIVANTHLYWDPEWADVKLAQAKYLLSRLAQFKTVVSDKFECTPSVLVAGDFNSTPGDKVYQYLVSGNSSVPQLECLDGLPIPLCSVYDFTRGEPPFTNCTPDFTNTLDYIFFSPSGHIKPVSFLELPEPDSSDVAGGLPNHHHPSDHLPIGAEFKVTGE* 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17687720 17713368 - Vvi2g936 Vvi2g936 783635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g936 393 PANTHER BNAC08G09040D PROTEIN 10 391 - -
Vvi2g936 393 MobiDBLite consensus disorder prediction 174 211 - -
Vvi2g936 393 Gene3D Endonuclease/exonuclease/phosphatase 38 393 IPR036691 -
Vvi2g936 393 MobiDBLite consensus disorder prediction 176 202 - -
Vvi2g936 393 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 10 391 - -
Vvi2g936 393 MobiDBLite consensus disorder prediction 364 385 - -
Vvi2g936 393 Pfam Endonuclease/Exonuclease/phosphatase family 61 381 IPR005135 GO:0003824
Vvi2g936 393 SUPERFAMILY DNase I-like 57 389 IPR036691 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g936 K12603 CNOT6, CCR4; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] - vvi:100256249 795.038
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g936 . . . . . . . . Cmo06g00577 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma06g00571 . Car06g00508 . . Cpe06g00591 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009643 1 2 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 2 2 1 31