Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi2g939 | ATGGGATCCAGTTCCAGCAAACCCCATTCAGCTTCTTCAACTTCATCTTCATCCGTACATAGAGCTCACAGGGTTTTCCACTCATCATGCCTCAGGCCTCCATCTGGATCTCACCACAGTGACAGTGACAATGACAGTGATGACCACCCGAACAAAGAAAATGGCTGCAATGGTCCGTGCACAGATCAGAATGAGACAGAGTCTGATCAATTGAAAAGTGGGTGTTTCAGAAAGGTTAAAGTTGAACAACCTGATGAAATGCCCTCCATATCTTCTAATGTTGGTCTCCAGGAGTGGGACCAAGCGAATTTCACTCGTACTTCCTCCAGAGCAGGTAGCAGCTCCACCCGAGCTTCATCGACTCAATCCTTGAACCCTTCTAGTCGCTTCCTCTCTCGCTTTAGTTTAATTCCTGGTAACATAAGCTTCAGGCTAAGCAGAGCAAGCAGTTTAGGTTCATCTCGAGCTTATCCTGTTTCTTCCTCAAGTATTACTTCGAACAATAATTCTGCTAATAGAAGACTAGACCCTCCATCATCTGTTTTTTCTGACAATATGCGGGATAACCCAACAATTACTACTCATGATGTAAATTTACATTCTACAAGTGGTCATGCTGAGATAGAGAGCATGGAGACAAGGCTTGCTGATAGGCGGATTGGACCTCGAGAACCTGTAGAACGGAATGTTCGTTTTAGCCGAACCTTAAGTGTTGGAAGACTCCGTGACAGAGTTCTTCGACGATCTTCATTTTCTGACTTAACATTTTGTCCTCTGAGAAGAGAGAGGGAAGCAAGAGATATGAGTCAGGGTAGTGAGAGGCAGGTTTTGGACAATGAGACAAGAGCACCAGCAACTGACAGGAATGTTGCAACCTCACCAACTTCATCTGGGTATCCTCTGGATGCCAGGTATCATGATCTGCTGGAACATAGATCAAATTTTCTTGAGAGGAGAAGACGAATAAGATCTCAGGTTCGTGCTCTTCAGAGGCTAGGCAGTCGTTTTGAGAACCTGTCTGGACATGAGAGATCTTGTATCTCATCAGGTCAACATAGAACAGGTCGTTGTACATGCCGTGTAAATACTCGGGATGCTAATTCAAATGATGACACTAGTGCTAGGGCTAGCATATCAAGAATTGTTATGTTGGCTGAAGCGCTGTTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTCTTATCGTCCCGACCTTCTGTATCTTCTATTGGTTCTGTTCCTGCTCCAAATGAAGTTGTAGAATCTTTGCCTTTGAAATTATACGACAAGTCACAAAAACATCAAAATGATGAGGCTGCACAATGTTATATATGCCTTGTGGAGTATGAGGAAGGAGACAACATGCGGGTGTTACCTTGCCATCATGAATTTCATAGGACATGTGTAGACAAGTGGCTAAAAGAGATACACAGGGTATGCCCACTTTGCCGCGGGGATATTTGCAGATCAGGTTCATTGCTTGCAGAAAACTAA | 1497 | 44.09 | MGSSSSKPHSASSTSSSSVHRAHRVFHSSCLRPPSGSHHSDSDNDSDDHPNKENGCNGPCTDQNETESDQLKSGCFRKVKVEQPDEMPSISSNVGLQEWDQANFTRTSSRAGSSSTRASSTQSLNPSSRFLSRFSLIPGNISFRLSRASSLGSSRAYPVSSSSITSNNNSANRRLDPPSSVFSDNMRDNPTITTHDVNLHSTSGHAEIESMETRLADRRIGPREPVERNVRFSRTLSVGRLRDRVLRRSSFSDLTFCPLRREREARDMSQGSERQVLDNETRAPATDRNVATSPTSSGYPLDARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCISSGQHRTGRCTCRVNTRDANSNDDTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNEVVESLPLKLYDKSQKHQNDEAAQCYICLVEYEEGDNMRVLPCHHEFHRTCVDKWLKEIHRVCPLCRGDICRSGSLLAEN* | 499 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 17748344 | 17758642 | + | Vvi2g939 | Vvi2g939 | 783638 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi2g939 | 498 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 497 | - | - | |
Vvi2g939 | 498 | MobiDBLite | consensus disorder prediction | 153 | 182 | - | - | |
Vvi2g939 | 498 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 405 | 490 | IPR013083 | - | |
Vvi2g939 | 498 | SMART | ring_2 | 443 | 484 | IPR001841 | - | |
Vvi2g939 | 498 | MobiDBLite | consensus disorder prediction | 264 | 299 | - | - | |
Vvi2g939 | 498 | CDD | RING-H2_PA-TM-RING | 442 | 485 | - | - | |
Vvi2g939 | 498 | MobiDBLite | consensus disorder prediction | 106 | 126 | - | - | |
Vvi2g939 | 498 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Vvi2g939 | 498 | MobiDBLite | consensus disorder prediction | 56 | 70 | - | - | |
Vvi2g939 | 498 | ProSiteProfiles | Zinc finger RING-type profile. | 443 | 485 | IPR001841 | - | |
Vvi2g939 | 498 | SUPERFAMILY | RING/U-box | 424 | 489 | - | - | |
Vvi2g939 | 498 | MobiDBLite | consensus disorder prediction | 285 | 299 | - | - | |
Vvi2g939 | 498 | MobiDBLite | consensus disorder prediction | 38 | 52 | - | - | |
Vvi2g939 | 498 | MobiDBLite | consensus disorder prediction | 1 | 71 | - | - | |
Vvi2g939 | 498 | Pfam | Ring finger domain | 442 | 485 | IPR001841 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi2g939 | - | - | vvi:100249371 | 863.603 |