Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g939 ATGGGATCCAGTTCCAGCAAACCCCATTCAGCTTCTTCAACTTCATCTTCATCCGTACATAGAGCTCACAGGGTTTTCCACTCATCATGCCTCAGGCCTCCATCTGGATCTCACCACAGTGACAGTGACAATGACAGTGATGACCACCCGAACAAAGAAAATGGCTGCAATGGTCCGTGCACAGATCAGAATGAGACAGAGTCTGATCAATTGAAAAGTGGGTGTTTCAGAAAGGTTAAAGTTGAACAACCTGATGAAATGCCCTCCATATCTTCTAATGTTGGTCTCCAGGAGTGGGACCAAGCGAATTTCACTCGTACTTCCTCCAGAGCAGGTAGCAGCTCCACCCGAGCTTCATCGACTCAATCCTTGAACCCTTCTAGTCGCTTCCTCTCTCGCTTTAGTTTAATTCCTGGTAACATAAGCTTCAGGCTAAGCAGAGCAAGCAGTTTAGGTTCATCTCGAGCTTATCCTGTTTCTTCCTCAAGTATTACTTCGAACAATAATTCTGCTAATAGAAGACTAGACCCTCCATCATCTGTTTTTTCTGACAATATGCGGGATAACCCAACAATTACTACTCATGATGTAAATTTACATTCTACAAGTGGTCATGCTGAGATAGAGAGCATGGAGACAAGGCTTGCTGATAGGCGGATTGGACCTCGAGAACCTGTAGAACGGAATGTTCGTTTTAGCCGAACCTTAAGTGTTGGAAGACTCCGTGACAGAGTTCTTCGACGATCTTCATTTTCTGACTTAACATTTTGTCCTCTGAGAAGAGAGAGGGAAGCAAGAGATATGAGTCAGGGTAGTGAGAGGCAGGTTTTGGACAATGAGACAAGAGCACCAGCAACTGACAGGAATGTTGCAACCTCACCAACTTCATCTGGGTATCCTCTGGATGCCAGGTATCATGATCTGCTGGAACATAGATCAAATTTTCTTGAGAGGAGAAGACGAATAAGATCTCAGGTTCGTGCTCTTCAGAGGCTAGGCAGTCGTTTTGAGAACCTGTCTGGACATGAGAGATCTTGTATCTCATCAGGTCAACATAGAACAGGTCGTTGTACATGCCGTGTAAATACTCGGGATGCTAATTCAAATGATGACACTAGTGCTAGGGCTAGCATATCAAGAATTGTTATGTTGGCTGAAGCGCTGTTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTCTTATCGTCCCGACCTTCTGTATCTTCTATTGGTTCTGTTCCTGCTCCAAATGAAGTTGTAGAATCTTTGCCTTTGAAATTATACGACAAGTCACAAAAACATCAAAATGATGAGGCTGCACAATGTTATATATGCCTTGTGGAGTATGAGGAAGGAGACAACATGCGGGTGTTACCTTGCCATCATGAATTTCATAGGACATGTGTAGACAAGTGGCTAAAAGAGATACACAGGGTATGCCCACTTTGCCGCGGGGATATTTGCAGATCAGGTTCATTGCTTGCAGAAAACTAA 1497 44.09 MGSSSSKPHSASSTSSSSVHRAHRVFHSSCLRPPSGSHHSDSDNDSDDHPNKENGCNGPCTDQNETESDQLKSGCFRKVKVEQPDEMPSISSNVGLQEWDQANFTRTSSRAGSSSTRASSTQSLNPSSRFLSRFSLIPGNISFRLSRASSLGSSRAYPVSSSSITSNNNSANRRLDPPSSVFSDNMRDNPTITTHDVNLHSTSGHAEIESMETRLADRRIGPREPVERNVRFSRTLSVGRLRDRVLRRSSFSDLTFCPLRREREARDMSQGSERQVLDNETRAPATDRNVATSPTSSGYPLDARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCISSGQHRTGRCTCRVNTRDANSNDDTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNEVVESLPLKLYDKSQKHQNDEAAQCYICLVEYEEGDNMRVLPCHHEFHRTCVDKWLKEIHRVCPLCRGDICRSGSLLAEN* 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17748344 17758642 + Vvi2g939 Vvi2g939 783638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g939 498 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 497 - -
Vvi2g939 498 MobiDBLite consensus disorder prediction 153 182 - -
Vvi2g939 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 405 490 IPR013083 -
Vvi2g939 498 SMART ring_2 443 484 IPR001841 -
Vvi2g939 498 MobiDBLite consensus disorder prediction 264 299 - -
Vvi2g939 498 CDD RING-H2_PA-TM-RING 442 485 - -
Vvi2g939 498 MobiDBLite consensus disorder prediction 106 126 - -
Vvi2g939 498 MobiDBLite consensus disorder prediction 1 23 - -
Vvi2g939 498 MobiDBLite consensus disorder prediction 56 70 - -
Vvi2g939 498 ProSiteProfiles Zinc finger RING-type profile. 443 485 IPR001841 -
Vvi2g939 498 SUPERFAMILY RING/U-box 424 489 - -
Vvi2g939 498 MobiDBLite consensus disorder prediction 285 299 - -
Vvi2g939 498 MobiDBLite consensus disorder prediction 38 52 - -
Vvi2g939 498 MobiDBLite consensus disorder prediction 1 71 - -
Vvi2g939 498 Pfam Ring finger domain 442 485 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g939 - - vvi:100249371 863.603