Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g942 ATGATGGTGATGAGGAGAAGACTGGCATGTTGCACAAGGGAAAGAGAGCTCAGCCTCGACTTGGATGAGCAAGAGAGGATCATGACCTATAATGGACTGGAGAATTGCATCCTCAATGGCCACTCTTATGAAAATGAAAGTCATACTAGCAGAGGAGATGGATGTGCAACCGACTCCTTGGATGAAGATGACACGAGCTGTTCTTCAAGCAAAGATGCTTTTGGATCTTTCTCGTCTAAATGGTTGACGATGAACATGAAGAAGGATGAACATGGACTGGATGAGTGGGAGGTCCCTGAGAGTCCCCAACACTTTTATGTCAAAGAGAAACCGGGTTATTCCGTTCGGTTTTCAGATGTTGAGGTCATGAAAGAAAGATTTTCAAAGCTGTTATTGGGTGAAGATATTACTGGAGGAAAAAAGGGTCTAACCTCTGCATTAGCATTGTCCAATGCAATAACGAACCTTGCAGTGTCAGTTTTTGGGGAGCTGTGGAAATTGGAGCCGCTATCTGAAGAAAGAAAGGTCAAATGGCAACGAGAAATGGACTGGTTGCTCTCCCCCACCAACTACATGGTTGAGTTGGTACCTGCAAAGCAAAGCGGCGCCAATGGCCGAACCTTGGAGATAATGACCCCAAAAGCCCGGGCTGACATCCACATGAATCTCCCTGCACTTCAGAAGCTTGACTCTATGCTTATTGAGACGCTGGACTCGATGGTGGACACAGAGTTTTGGTATGCAGAAGGAGGGAGCCGGGCAGAAGGAAGGACCAGAAGCATGAGCCAGAGCAAAAGGTGGTGGCTCCCATCACCCCAAGTACCAACAACCGGGCTCTCAGACCCTGAAAGAAAGAAGCTGCTTCATCAGGCTAAGGTGGTACATCAAGTGTTCAAGGCTGCCAGAGCAATCAACGAAAATGTGCTGCTGGAAATGCCTGTGCCAACCCTCATCAGGGATGCTCTCGCCAAGTCTGGAAAGGCAAACCTTGGTGAGGAACTATACCGGGTACTGACTGCAGAATCAAGCTCTGCTGAGGAGATGCTGAGTTCCCTCAATCTGAAATCTGAGCACAGTGCTCTCGAGGCCATTAACAGGCTGGAAGCTGCAGTATTCGCATGGAAGGAGAGAATCACAGAGCAAGTCAGCGGTAAATCTCCTGTTCGAACATCATGGTCTTTCATAAAAGACCCCACGACCGAGCTGGACAAAATGGAGTTGATTCTGTTCCGTGCTGAAGCTCTCTTGCAACAGCTCAGGACCCGGTATCCAAATCTCCCTCAGTCCTTCCTTGATGTGGCGAAAATCCAATATGGCAAGGACATAGGACACTCCATCCTGGAAGCCTATTCTCGGGTTCTTGGCAACTTGGCATCCAGCATACTCTGCCGAATGCGTGATATTCTGCAGGAAGACGTCTTCAGCAATCCAAACTCACCCATTGCAACAACAAGCTGCTTTCCGGGAATCAATCTCACTGGAATGACTGAAACTCCAACGCCTAGTCTGCGCATAAGACACTCACTGATTGATCAGATGAACATGGTGGATGGGCGGTTTCGTGACCCGAATGCAGGTGCTTCTCCTGACTGTGAAGCGTCATACAGCGACTCCAGAAGAAGCTCAGTCATGGCAACGCCTAGCCGGAGCCGGAAGTATAAGAAGAAGACGACGACCCATCTCAAAAGTCGCTTCGAACAGGGGCTGAATTATATCATGGGTTTGCCAAGATTTTCACGTCCTAAGGGAGTGGATGGCGAGTTGAGTCCTAATCTCTATGTGGCAAACTGTGGGCCAGCTGTTGGACTTTCTTTTGACACTATCGCTTCAGTGTTCAGTACCTTTGGAGAAGTGAAAGGGGTCTATCCAGCAGATGACAGTGGTGCTCGCGTTATTGTTTCTTATTTTGAAGAGAGTGCTGCTCAAGCAGCCTTAAAAGCATTAGATGGACATCCCTGTCCTGCTCTTGGAGGTCGTTTTTTGCACATTCGTTATTCAATATTTCAACCACCTAGCCAGGTCAATGATTCTGTACCAGTATCTTTGGTGGATTCAGAGTTGAACATTCCAGGCATCTACTTGTTGCATGATTTTGTCAGTGCTAAAGAAGAGGAGGAACTGCTTGCAGCGGTTGATAAGATGTCTTGGAAAAGTCTCTCAAAAAGAAGGGTCCAACATTATGGATATGAGTTTTGCTATGAAACAAGGAACGTTAATACAAAACAGTATTTGGGCAAACTTCCATCATTTGTTTCTGCTATAGTTGAAAGAATCTCATCATTTCCCAACCTTGAATCTGCCGCTGATATAGTTTTGGACCAACTAACGGTTAACGAGTATCCACCTGGTGTGGGCTTGTCCCCACATATAGATACCCATTCAGCATTTGAGGGATTCATTTTCAGCCTCTCATTGGCAGGGCCCTGCATTATGGACTTCAGAAGATATACAGAAGGTGTTTGGCCTAAATCTGCCTCAAGCTCTGACATGAGTGTGGAATATCCTGACAAAAGCTCAAGTTTTTTAAGAAGGGCTATTTATCTTCCCCCCCGTTCAATGCTTCTGTTATCTGGAGAGGCACGGTATGCTTGGCATCACTATATTCCCCACCATAAGATCGACATGGTGAAGGACAGTGTGATCAGAAGAGGTCCGAGGAGGGTATCCTTCACATTTCGTAAGGTGAGAACAGGTCCTTGCCAATGTGAATTTCCTCAGTATTGTGACTCCCCCAGATAA 2739 46.88 MMVMRRRLACCTRERELSLDLDEQERIMTYNGLENCILNGHSYENESHTSRGDGCATDSLDEDDTSCSSSKDAFGSFSSKWLTMNMKKDEHGLDEWEVPESPQHFYVKEKPGYSVRFSDVEVMKERFSKLLLGEDITGGKKGLTSALALSNAITNLAVSVFGELWKLEPLSEERKVKWQREMDWLLSPTNYMVELVPAKQSGANGRTLEIMTPKARADIHMNLPALQKLDSMLIETLDSMVDTEFWYAEGGSRAEGRTRSMSQSKRWWLPSPQVPTTGLSDPERKKLLHQAKVVHQVFKAARAINENVLLEMPVPTLIRDALAKSGKANLGEELYRVLTAESSSAEEMLSSLNLKSEHSALEAINRLEAAVFAWKERITEQVSGKSPVRTSWSFIKDPTTELDKMELILFRAEALLQQLRTRYPNLPQSFLDVAKIQYGKDIGHSILEAYSRVLGNLASSILCRMRDILQEDVFSNPNSPIATTSCFPGINLTGMTETPTPSLRIRHSLIDQMNMVDGRFRDPNAGASPDCEASYSDSRRSSVMATPSRSRKYKKKTTTHLKSRFEQGLNYIMGLPRFSRPKGVDGELSPNLYVANCGPAVGLSFDTIASVFSTFGEVKGVYPADDSGARVIVSYFEESAAQAALKALDGHPCPALGGRFLHIRYSIFQPPSQVNDSVPVSLVDSELNIPGIYLLHDFVSAKEEEELLAAVDKMSWKSLSKRRVQHYGYEFCYETRNVNTKQYLGKLPSFVSAIVERISSFPNLESAADIVLDQLTVNEYPPGVGLSPHIDTHSAFEGFIFSLSLAGPCIMDFRRYTEGVWPKSASSSDMSVEYPDKSSSFLRRAIYLPPRSMLLLSGEARYAWHHYIPHHKIDMVKDSVIRRGPRRVSFTFRKVRTGPCQCEFPQYCDSPR* 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17792451 17808739 - Vvi2g942 Vvi2g942 783641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g942 912 SUPERFAMILY Clavaminate synthase-like 689 896 - -
Vvi2g942 912 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 20 553 IPR038937 GO:0005085
Vvi2g942 912 Gene3D - 582 677 IPR012677 -
Vvi2g942 912 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 118 475 IPR005512 GO:0005085
Vvi2g942 912 MobiDBLite consensus disorder prediction 534 548 - -
Vvi2g942 912 Coils Coil 402 422 - -
Vvi2g942 912 Gene3D - 687 899 IPR037151 -
Vvi2g942 912 ProSiteProfiles PRONE domain profile. 110 482 IPR005512 GO:0005085
Vvi2g942 912 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 14 20 553 - -
Vvi2g942 912 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 771 896 IPR005123 -
Vvi2g942 912 SUPERFAMILY RNA-binding domain, RBD 590 672 IPR035979 GO:0003676
Vvi2g942 912 Pfam 2OG-Fe(II) oxygenase superfamily 692 893 IPR027450 -
Vvi2g942 912 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 590 668 IPR000504 GO:0003723
Vvi2g942 912 Gene3D PRONE domain, subdomain 1 113 351 - -
Vvi2g942 912 Gene3D PRONE domain, subdomain 1 354 481 - -
Vvi2g942 912 MobiDBLite consensus disorder prediction 45 71 - -
Vvi2g942 912 MobiDBLite consensus disorder prediction 521 558 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g942 - - - cic:CICLE_v10004016mg 1242.25
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g942 . . . . . Bpe07g00049 . . . . . . . . . . Cpe02g00587 . . . . . . . . . . . . . . . . Cone6ag0886 Cone9ag0890 . . . . Blo03g00905 . . . . . . Bma12g00627 . . . . . . . . Cpe06g00592 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003226 0 5 2 2 2 0 2 1 0 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 1 9 2 1 49