Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g947 ATGAATGCGTTCAAGGCTTTTAAAGCATGTGTTCCGGTTGCATGGAGCCCTAATCTTTATATAACCTTGGTGAGGGGCATTCCAGGAACTAGGAGACTCCACAGGCGTACATTAGAGGCACTGCGCCTCCGAAAGTGCAACCGAACTGTCATGAGATGGAACACTCCTACTGTCAGGGGAATGCTTCAACAGGTAAAAAGATTAGTTGTTATTGAGACAGAAGAGATGTATAAGGCTCGCAAACTGAAGGAGACCAACCATCGAGCTCTACGCCCACCTTTGGTCATAAACCATGTCCTTCCCCCACCAGCAAATGATTCTTCTTAG 327 46.79 MNAFKAFKACVPVAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKARKLKETNHRALRPPLVINHVLPPPANDSS* 109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17983715 17984127 - Vvi2g947 Vvi2g947 783646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g947 108 Gene3D - 17 78 IPR036919 -
Vvi2g947 108 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L30 1 106 IPR005996 GO:0003735|GO:0006412|GO:0015934
Vvi2g947 108 Pfam Ribosomal protein L30p/L7e 20 69 IPR016082 -
Vvi2g947 108 TIGRFAM rpmD_bact: ribosomal protein uL30 19 72 IPR005996 GO:0003735|GO:0006412|GO:0015934
Vvi2g947 108 PANTHER RIBOSOMAL PROTEIN L30, FERREDOXIN-LIKE FOLD DOMAIN-CONTAINING PROTEIN-RELATED 1 106 - -
Vvi2g947 108 SUPERFAMILY Ribosomal protein L30p/L7e 18 72 IPR036919 -
Vvi2g947 108 CDD Ribosomal_L30 19 72 IPR005996 GO:0003735|GO:0006412|GO:0015934
Vvi2g947 108 Hamap 50S ribosomal protein L30 [rpmD]. 16 73 IPR005996 GO:0003735|GO:0006412|GO:0015934
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g947 K02907 RP-L30, MRPL30, rpmD; large subunit ribosomal protein L30 - vvi:100261459 223.016
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g947 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag1268 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .