Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g948 ATGGCTGAAAGCCAGACAAACCCTAAACCAAAAGAAATCTCCCCGGACGCCAAAACCCTCCTCCAAATCATTTCCGCCACCGCCCCCCACGCCCTCGTCGCCGCCCTCTCCGCCACCTCCATCCCCCCAACCCCGGACGTCGTCCAAGACGTCCTCCGCCTTTCCTACTCCAACTCCTCAGCTGCCGTCGAGTTCTTCCGTTGGGCGGGCCTCACGCGTAAGCACTCCGCTCACTCATGGAACCTCATCGTCGACCTACTCGGCAAGAACTCCAAGTTCGAGCCCATGTGGGACGCAATTCGGTCCATGAGGAATGAGGGTGCGTTGTCGTTGTCCGCTTTTATTTCTGTTTTCGGAAGCTATTGCTCCGTCGGCAGGGTTAATGAGGCGATTATGAGCTTTGAGGTTATGGACAGGTATGGAATTCCACCGGATGTGGCAGCAATGAATGCTCTATTAAGTGCCATTTGCTGCGAGGGTGGCTCAACTACACTGGCGCTTGAATTCTTTGAGAAAATCAAAGTGAAGATTACACCAGATGGTGATACTTTCATGATCTTGTTGGAGGGGTGGGAGAGAGAAGGCAACGTGACAAAGGCGAAGAGTACTTTTGGGGAAATGGTGGTTCGACTTGGTTGGAGTCCGCAAAATATGGTGGCTTACAACTCGGTTTTGATGACACTTGTTCGAGGAATGGAGGTGGAGGAGGCAATCAAGTTTCTTCTAGTGATGAAAGGGAAGGGTTGCTTGCCAGGTTTGAAATTCTTCTCTAATGCTCTTGATGTTCTCCTTAAGCAGAATGATTCAACTCATGCAATTGCTTTGTGGGACATAATGTTGGATGGTGGTTTCATGCCAAATTTGATGATGTATAATACCATAATTGGTATACTCTGCAATGCTGGTGATGCTGATAACGCATTTCGGTTTTTGGATGAGATGGTTTTCTATGGTGTGTTTGCTGATTCTTTCACGTATAACATGATTTTTCAATGTCTTGTTAAGCATAAGAAGGTTCATGAAGCGGGAAAGTTCTTCATCGAAATGATCAAGAATGAATGTCCTCCAATGCCTTCTAATTGTGCTGCTGCTATTGCAATGTGTTTTGATGGTGATGACCCGGAGATGGCAATTGAGATTTGGAGCTATATGATTGAGAACTCACTCTCTCCTGTTGACGAGAGTGCAAATGCATTGCTTATTGGGCTTTGTAATTTGCGTAGGTTTTCTGATTACAGGAGGTTTGCAGAAGATATGCTTGATATGAAGATTAAAATTCATGAGTCAACCATGGAAAAACTGAAGAATGCACGCTACAAAGATGGTAGAAGTGCAAGAGATACATGTGATAGTTTATGGAAAAGGTGGAAAGTATCTCAAGATTCTGTTTTATGA 1395 45.66 MAESQTNPKPKEISPDAKTLLQIISATAPHALVAALSATSIPPTPDVVQDVLRLSYSNSSAAVEFFRWAGLTRKHSAHSWNLIVDLLGKNSKFEPMWDAIRSMRNEGALSLSAFISVFGSYCSVGRVNEAIMSFEVMDRYGIPPDVAAMNALLSAICCEGGSTTLALEFFEKIKVKITPDGDTFMILLEGWEREGNVTKAKSTFGEMVVRLGWSPQNMVAYNSVLMTLVRGMEVEEAIKFLLVMKGKGCLPGLKFFSNALDVLLKQNDSTHAIALWDIMLDGGFMPNLMMYNTIIGILCNAGDADNAFRFLDEMVFYGVFADSFTYNMIFQCLVKHKKVHEAGKFFIEMIKNECPPMPSNCAAAIAMCFDGDDPEMAIEIWSYMIENSLSPVDESANALLIGLCNLRRFSDYRRFAEDMLDMKIKIHESTMEKLKNARYKDGRSARDTCDSLWKRWKVSQDSVL* 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18028404 18030254 - Vvi2g948 Vvi2g948 783647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g948 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Vvi2g948 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Vvi2g948 464 PANTHER OSJNBA0019D11.15 PROTEIN 5 460 - -
Vvi2g948 464 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 5 460 - -
Vvi2g948 464 Gene3D Tetratricopeptide repeat domain 162 245 IPR011990 GO:0005515
Vvi2g948 464 Gene3D Tetratricopeptide repeat domain 254 463 IPR011990 GO:0005515
Vvi2g948 464 Pfam Pentatricopeptide repeat domain 136 188 IPR002885 -
Vvi2g948 464 Pfam PPR repeat family 286 335 IPR002885 -
Vvi2g948 464 Gene3D Tetratricopeptide repeat domain 51 160 IPR011990 GO:0005515
Vvi2g948 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Vvi2g948 464 Pfam PPR repeat 219 249 IPR002885 -
Vvi2g948 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Vvi2g948 464 TIGRFAM PPR: pentatricopeptide repeat domain 290 322 IPR002885 -
Vvi2g948 464 TIGRFAM PPR: pentatricopeptide repeat domain 324 356 IPR002885 -
Vvi2g948 464 TIGRFAM PPR: pentatricopeptide repeat domain 219 251 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g948 - - - vvi:109121403 936.406
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g948 . . . . . . Bma07g01219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda09g00467 . . . . . . . . . . . . Cpe06g00595 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011572 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 28