Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g953 ATGGCTACTGAACCTTCCGCCGATTCCTACGTAGGCAGCTTCATCACTTTGATATCCAAGTGCGAGATTCGCTACGAGGGCGTCCTCTATTTCCTCAACGCCCAAGACTCCACCATCGGCTTGAAAAACGTAAGGTCTTATGGGACAGAGGGACGAAAGAAAGATGGCACACAAATTCCTCCAAGTGATAAAGTGTATGAATTCATTCTTTTCCGGGGAAGTGACATTAAGGATTTGCAAGTTAAGTCAACACCACCTGCTCAAAAAGAAGATCAGATTCATGATGATCCTGCTATCATTCAGTCACATTGCTCTGGCGGGCTTTCAAGTTCTCTGGCATCAGCTTCAGTTGGTGGTGGAGCTTTGACAGAATCAAGTGGTTACCAGGATGCCCCTGCTTTGGTCCATAGAGCCTATCCTGGTGCATTACCTTCATATCAATCTGGCATGCCGGTGGGTCCATTGGGCCAACCGCAAACCACTCAAATTGCTGGTGTGCCATCTCACGCCATGTCAATGTATTGGCAAGGATATAATGAAACATCAATCAGTACCTCTCATGCTCCACAGCAGCCTTCTCCTCAGGCAACATCCACAACGTCATTTCCCTCAGCATTGCCGAATGAGTTGCAGGCTCCTGAAATTCAGGCATCTCCATCTGAACAGTTTTCTACTTCTTCTGATACAATGTCCTTCTTGTCTGCGAAGGCAACTCTGCCATCCTACTCTGCACCTGTAAATTCGAATATAATAAACATGTCTTCATTTCCTTCATCTTATCAAGACGTTAACACCACTGAAGCTCCAATTACTGGTAAAATAGTTTCTGATCTGGTATCGGTGCCTCCTATCCATCCCCTGCATCATTCTGCATCCACAATAGGGGGTTCCACCTCTGGCCTCCTTCTGACTCCACCACCAACTTTATTAACTCCTGATCAATTAGCACAGCCCATGTCATCCATGCTTTCTTCCTCACAGAAAGTATACCCTGATCAGAGGGATAAGGTTGCTCCAACATCAACATCTCCTAATACTTTGAGCACAATGTCTACTCCAGCACTTCAAGCACCATTGTTGCCATTGCCAGCCTCTGCTCAACAGTCTCAGAAGTCTGCTGTGCAGTTCACTGAAGAATTCGATTTTATAGCGATGAATGAAAGGTTTAAAAAGGATGAAGTTTGGGGTTATCTTGGAAAGGCAAAGCAAAGGGATGAAAAGGAAGGGATGGAGGACAATGCACTTGGTCAAGGCTTGGGTGACAGAGAGGGTTATGGACAAGTACCCAAATCGGATGCTAAACCTGCTTATAATAAGGATGAGTTCTTTGACACAATTTCTTGTAATTCTCATGCCCGCGGGACTAGGAATGGACAGAACAGGTTCTCTGCGCGAATGAAGATGGATACTGAGACTTTTGGCAATTTTCAGCAGAGACCTCATCTAGGTTATGGTGGCTACAGAGCTGGGCGTGGTGAGAACTACCGTGGCTCATATAACCGGGGAAGAGGATTTGCCTATGGTGGGAGAGGGGGTGGTTGGGACATGCCCATGTGA 1557 46.24 MATEPSADSYVGSFITLISKCEIRYEGVLYFLNAQDSTIGLKNVRSYGTEGRKKDGTQIPPSDKVYEFILFRGSDIKDLQVKSTPPAQKEDQIHDDPAIIQSHCSGGLSSSLASASVGGGALTESSGYQDAPALVHRAYPGALPSYQSGMPVGPLGQPQTTQIAGVPSHAMSMYWQGYNETSISTSHAPQQPSPQATSTTSFPSALPNELQAPEIQASPSEQFSTSSDTMSFLSAKATLPSYSAPVNSNIINMSSFPSSYQDVNTTEAPITGKIVSDLVSVPPIHPLHHSASTIGGSTSGLLLTPPPTLLTPDQLAQPMSSMLSSSQKVYPDQRDKVAPTSTSPNTLSTMSTPALQAPLLPLPASAQQSQKSAVQFTEEFDFIAMNERFKKDEVWGYLGKAKQRDEKEGMEDNALGQGLGDREGYGQVPKSDAKPAYNKDEFFDTISCNSHARGTRNGQNRFSARMKMDTETFGNFQQRPHLGYGGYRAGRGENYRGSYNRGRGFAYGGRGGGWDMPM* 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18148042 18167990 - Vvi2g953 Vvi2g953 783652

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g953 518 SUPERFAMILY Sm-like ribonucleoproteins 9 86 IPR010920 -
Vvi2g953 518 MobiDBLite consensus disorder prediction 182 206 - -
Vvi2g953 518 ProSiteProfiles TFG box profile. 457 477 IPR025768 -
Vvi2g953 518 Gene3D - 2 85 - -
Vvi2g953 518 SMART FDF_2 374 477 IPR019050 -
Vvi2g953 518 Pfam FDF domain 374 475 IPR019050 -
Vvi2g953 518 Pfam Scd6-like Sm domain 10 83 IPR025609 -
Vvi2g953 518 ProSiteProfiles DFDF domain profile. 368 404 IPR025762 -
Vvi2g953 518 MobiDBLite consensus disorder prediction 405 433 - -
Vvi2g953 518 PANTHER SCD6 PROTEIN-RELATED 222 507 - -
Vvi2g953 518 PANTHER SCD6 PROTEIN-RELATED 1 224 - -
Vvi2g953 518 CDD LSm14_N 7 81 IPR025609 -
Vvi2g953 518 ProSiteProfiles FFD box profile. 435 450 IPR025761 -
Vvi2g953 518 SMART LSM14_2 4 104 IPR025609 -
Vvi2g953 518 PANTHER DECAPPING 5-LIKE PROTEIN-RELATED 1 224 - -
Vvi2g953 518 PANTHER DECAPPING 5-LIKE PROTEIN-RELATED 222 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g953 K18749 LSM14, RAP55, SCD6; protein LSM14 - vvi:100244212 920.613
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g953 . . . . . . . . . . . . . . . . Cpe02g00579 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010870 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 2 1 0 0 1 0 1 1 0 1 1 18 1 30