Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g954 ATGGGCTCCCAGGGTGGCTTCGGCAATTCCAAGGAGTTTTTGGATCTCGTCAAGTCCATCGGCGAGGCTCGATCCAAGGCGGAAGAGGACCGCATCGTCCTCCACGAGATCGAAACCCTCAAGCGTCGAATCGTGGAGCCGGACATCCCGAAGCGCAAGATGAAGGAGTTCATCATCCGCCTGGTGTACGTGGAGATGCTGGGTCACGATGCCTCCTTCGGCTACATTCATGCGGTCAAGATGACCCACGACGACTCCCTTCTCCTCAAGCGGACGGGGTACTTGGCGGTGACTCTATTTTTGAATGAGGATCATGATTTGATTATACTCATTGTCAATACCATTCAGAAGGATCTCAAATCGGACAATTATTTAGTGGTTTGCGCCGCGCTGAATGCGGTTTGCAAGTTGATCAATGAGGAGACTATTCCCGCGGTGCTTCCGCAGGTGGTGGAGCTACTTGGGCACTCGAAGGAAGCGGTTCGAAAGAAGGCCATCATGGCCCTACATCGGTTTTATCAGCGCTCACCGTCCTCGGTCACGCATCTCGTCTCCAATTTCAGAAAGAAGCTTTGTGATAATGATCCTGGAGTCATGGGTGCAACACTTTGCCCTCTTTTTGACCTTATTGCAGTAGATGCCAATTCTTACAAGGATTTGGTCATCAGCTTTGTGAGCATTCTTAAACAAGTAGCTGAGCGTAGATTACCGAAGACTTATGACTATCATCAGATGCCAGCTCCATTCATTCAGATCAGGTTGTTGAAAATTCTGGCATTGCTGGGCAGTGGTGATAGACAAGCAAGCGAAAACATGTATACTGTTGTGGGTGACATATTCAGGAAGTGTGATTCGACGAGTAACATAGGAAATGCTGTTCTTTATGAGTGCATATGCTGTGTTTCTTCTATATATCCAAACCCTAAATTATTAGAAGCTGCTGCTGATGTAATTTCCAGATTTTTGAAGAGTGATAGTCATAATCTAAAGTATATGGGCATTGATGCCCTTAGTAGACTGATAAAGATAAGTCCAGAAATTGCTGAACAACACCAATTGGCTGTCATTGATTGCTTAGAGGACCCAGATGATACTCTAAAGCGAAAAACCTTTGAGCTACTATATAGAATGACCAAGTCTTCAAATGTGGAAGTGATTGTTGATCGTATGATTGATTACATGATAAGCATTAATGATAATCATTACAAAACTGAAATAGCATCTCGATGTGTTGAACTGGCAGAGCAATTTGCACCAAGCAACCATTGGTTTATCCAGACCATGAATAAAGTCTTTGAGCATGCTGGAGATTTGGTCAATATTAAGGTGGCTGATAATTTGATGCGGTTGATTGCGGAGGGGTTCGGAGAGGACGATGATACTGCAGATTGTCAGCTTAGATCATCTGCTGTGGAATCGTATTTACGTATCATTGGAGAGCCAAAGCTTCCGTCTGCATTTCTTCAGGTTATTTGTTGGGTTTTGGGTGAGTATGGAACTGCGGGTGGAAAGTATTCTGCTTCCTATATCACTGGAAAGTTATGTGATGTGGCAGAGGCCCATTCAAGCAATGACACTGTTAAGGCATATGCTGTTACAGCGCTGATGAAAGTATATGCATTTGAAATAGCAGCAGGAAGAAAAGTGGATATGCTACCAGAGTGTCAATCCTTGATCGAAGAACTATCAGCATCCCACTCAACAGATTTACAACAGCGTGCCTATGAATTGCAAGCAGTTGTCACCCTAGATGCTCATGCTGTTGAGATTATAATGCCATCAGATGCTAGTTGTGAAGACATTGAGGTTGATAAAAACCTTTCATTCCTTGACAGTTATGTTGAACGGTCATTAGAACAAGGGGCTCAGCCCTATATTCCTGAGAATGAGCGTTCTGGAATGATAAATATTAGTAACTTCAGAAGCCAAGATCAGCATGACACTTCTACACATACCCTTAGGTTTGAGGCCTATGAGCTCCCAAAGACTTCAGCACCACCAAGGATATCTCCTGTTTCACTCGCACCCTCAACTGAACTTGTTCCAGTACCTGAGCCATCTTATCCTGTAGAAATGCACCATGTTGCATCTGTGCCATCTGTATCAGATACAGGGTCAACGGAACTCAGGCTGCGACTTGATGGAGTTCAAAAGAAGTGGGGCAGGCCAACTTACTCTTCTCCTGCATCGTCTTCCTCGGATTCTACTTCCCATAAGGCAGTAAATGGGGTCACACAATCTGATGTGAGTAGCACTAGCACCTCAAGAACACGTGATAGCTCTTATGATTCTAGGAGTGCACAAGCTGAAATTTCTTCAGAGAAGAAGAAGCTTGCTGCTTCACTATTTGGGGGTCCTTCAAAAACAGAGAAAAGACCGTCTTCTACTAGCCACAAGGTTGCAAGGTCCACTACTGATATTATGTCAATGTATTCAGAGTTCCCTCCAAGTGGGCAGAGCAGTGTTATTGCAAATCCTTTTACCACTAATGCAGGTGATGCTAATCTTATACCTGGTTTGTCAACCACGAACAAAACTGGGCATGCTAAGGGCCCAAACCCTAGAGATGCCTTAGAAAAAGACGCACTGGTGAGGCAAATGGGCGTGACCCCAATGAGCCAGAATCCCAACTTGTTCAAGGATTTGCTTGGCTAA 2655 44.6 MGSQGGFGNSKEFLDLVKSIGEARSKAEEDRIVLHEIETLKRRIVEPDIPKRKMKEFIIRLVYVEMLGHDASFGYIHAVKMTHDDSLLLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLVVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRKKAIMALHRFYQRSPSSVTHLVSNFRKKLCDNDPGVMGATLCPLFDLIAVDANSYKDLVISFVSILKQVAERRLPKTYDYHQMPAPFIQIRLLKILALLGSGDRQASENMYTVVGDIFRKCDSTSNIGNAVLYECICCVSSIYPNPKLLEAAADVISRFLKSDSHNLKYMGIDALSRLIKISPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYRMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVADNLMRLIAEGFGEDDDTADCQLRSSAVESYLRIIGEPKLPSAFLQVICWVLGEYGTAGGKYSASYITGKLCDVAEAHSSNDTVKAYAVTALMKVYAFEIAAGRKVDMLPECQSLIEELSASHSTDLQQRAYELQAVVTLDAHAVEIIMPSDASCEDIEVDKNLSFLDSYVERSLEQGAQPYIPENERSGMINISNFRSQDQHDTSTHTLRFEAYELPKTSAPPRISPVSLAPSTELVPVPEPSYPVEMHHVASVPSVSDTGSTELRLRLDGVQKKWGRPTYSSPASSSSDSTSHKAVNGVTQSDVSSTSTSRTRDSSYDSRSAQAEISSEKKKLAASLFGGPSKTEKRPSSTSHKVARSTTDIMSMYSEFPPSGQSSVIANPFTTNAGDANLIPGLSTTNKTGHAKGPNPRDALEKDALVRQMGVTPMSQNPNLFKDLLG* 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18191083 18218549 + Vvi2g954 Vvi2g954 783653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g954 884 SUPERFAMILY ARM repeat 10 584 IPR016024 -
Vvi2g954 884 PIRSF AP4_epsilon 1 677 IPR017109 GO:0015031|GO:0030124
Vvi2g954 884 PIRSF AP4_epsilon 830 884 IPR017109 GO:0015031|GO:0030124
Vvi2g954 884 PIRSF AP4_epsilon 633 809 IPR017109 GO:0015031|GO:0030124
Vvi2g954 884 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 4 806 - -
Vvi2g954 884 Gene3D - 3 594 IPR011989 -
Vvi2g954 884 MobiDBLite consensus disorder prediction 719 802 - -
Vvi2g954 884 PANTHER AP-4 COMPLEX SUBUNIT EPSILON-1 4 806 - -
Vvi2g954 884 MobiDBLite consensus disorder prediction 723 768 - -
Vvi2g954 884 Pfam Adaptin N terminal region 46 581 IPR002553 GO:0006886|GO:0016192|GO:0030117
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g954 K12400 AP4E1; AP-4 complex subunit epsilon-1 - vvi:100249377 1548.87
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g954 . . . . . . . . . . . . . . . . Cpe02g00578 . . . . . . . . . . . . . . . . . Cone9ag0348 . . . . Blo03g00913 . . . . . . . . . . . . . . . Cpe06g00599 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008303 1 1 1 0 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33