Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g956 ATGGACTCCTCCTTCACCACCATATGCTTCTCCATTGCTCTCCTCCTCTTTCTCATCCACTTTCTCCTAAAGCTCTTCTCCTTCTTCTCTGCTTCCACTGCCCGGAAACTCCCTCTCCCACCTGGCTCTCTGGGCTGGCCCTACATAGGAGAAACCTTTCAGCTTTACTCTCAGAACCCCAATGTCTTCTTTGCCTCCAAGCAAGAGAGGTATGGAACCATATTCAAAACCCACATATTGGGGTGCCCATGTGTGATGATTTCAAGTCCTGAAGCTGCAAAGCTGGTGCTGGTCACAAAGGCTCCTCTCTTTAAGCCTACATTTCCGGCTAGCAAAGAGAGGATGTTGGGGAAACAAGCAATTTTCTTTCACCAAGGTGACTACCATGCCAAGTTGAGGAAGCTTGTTCTCCGAGCCTTCATGCCAGGAGCCATCAAAAACATCGTCTCTAACATCGACTCCATCGCCACCCAGACCCTGCAGTCCTGGGAAGGCCGGTCGATCAATACTTTCCAAGAAATGAAGACATACACTTTCAATGTTGCACTGCTGTCCATATTTGGAAAAGATGAAATTCTGTACAGAGAGGAACTCAAGAAATGCTACTACATTCTTGAGAAGGGGTATAATTCAATGCCCATAAACATTCCTGGAACGCTCTTTAACAAATCAATGAAAGCAAGGAAGGAATTGGCTCAGATCTTGGCTAAAATCCTCTCAACAAGGAGGCAGGCGAACGGTGATCACAACGACTTGTTGGGATCTTTCATGGGAGACAAAGAAGGGCTCACAGATGAACAAATTGCAGACAACATCATAGGCGTCATCTTCGCGGCCCGAGACACTACTGCCAGTGTGCTGACATGGATCCTCAAGTATCTGGGCGAAAACCCGAGTGTTCTGCAAGCTGTCACGGAAGAGCAAGAGTCCATAATGAGGAGTAAAGAAGACAAGTGTGGTGAAGAGAAGTCTCTGACTTGGGAAGATGCCAAGAAGATGCCAATAACTTCAAGGGTGATTCAAGAAACACTTAGAATTGCTTCAATTTTATCTTTCACCTTTAGAGAGGCTGTTGAAGATGTTGAATTTGAAGGGTACCTGATTCCAAAAGGGTGGAAAGTTTTACCACTTTTCAGAAACATTCACCACAGTCCAGACATATATCCAGAGCCAGAGAAGTTTGATCCCTCAAGATTTGAGGTTGCTCCAAAGCCCAATACATTTATGCCATTTGGAAATGGGGTCCACTCATGCCCTGGGAATGAGTTGGCCAAACTAGAGATTTTGGTGCTTCTACATCATCTGACTACAAAGTACAGGTGGTCTATGGTGGGCACACAGAATGGTATTCAGTATGGCCCTTTTGCTCTTCCCCAGAATGGTTTGCCCATCACAATCTCCCTCAAGTCATAG 1413 45.86 MDSSFTTICFSIALLLFLIHFLLKLFSFFSASTARKLPLPPGSLGWPYIGETFQLYSQNPNVFFASKQERYGTIFKTHILGCPCVMISSPEAAKLVLVTKAPLFKPTFPASKERMLGKQAIFFHQGDYHAKLRKLVLRAFMPGAIKNIVSNIDSIATQTLQSWEGRSINTFQEMKTYTFNVALLSIFGKDEILYREELKKCYYILEKGYNSMPINIPGTLFNKSMKARKELAQILAKILSTRRQANGDHNDLLGSFMGDKEGLTDEQIADNIIGVIFAARDTTASVLTWILKYLGENPSVLQAVTEEQESIMRSKEDKCGEEKSLTWEDAKKMPITSRVIQETLRIASILSFTFREAVEDVEFEGYLIPKGWKVLPLFRNIHHSPDIYPEPEKFDPSRFEVAPKPNTFMPFGNGVHSCPGNELAKLEILVLLHHLTTKYRWSMVGTQNGIQYGPFALPQNGLPITISLKS* 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18248688 18251549 - Vvi2g956 Vvi2g956 783655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g956 470 PRINTS P450 superfamily signature 278 295 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g956 470 PRINTS P450 superfamily signature 338 349 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g956 470 PRINTS P450 superfamily signature 409 418 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g956 470 PRINTS P450 superfamily signature 418 429 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g956 470 PANTHER CYTOCHROME P450 26 8 467 - -
Vvi2g956 470 Pfam Cytochrome P450 40 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g956 470 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g956 470 PRINTS E-class P450 group I signature 267 284 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g956 470 PRINTS E-class P450 group I signature 287 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g956 470 PRINTS E-class P450 group I signature 337 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g956 470 PRINTS E-class P450 group I signature 377 401 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g956 470 PRINTS E-class P450 group I signature 408 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g956 470 PRINTS E-class P450 group I signature 418 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g956 470 SUPERFAMILY Cytochrome P450 35 466 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g956 470 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 411 420 IPR017972 GO:0005506|GO:0016705
Vvi2g956 470 Gene3D Cytochrome P450 29 468 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g956 470 PANTHER ABSCISIC ACID 8'-HYDROXYLASE CYP707A2 8 467 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g956 K09843 - vvi:100264783 924.465