Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g957 ATGGAAAAAGCCCAGAGAAACTGTGAGAATTACCTGCAAATTTCCAATCTATGCTGCACGGGTGTGATAAGGACTTATGCGCTTGAGGAGTTGAAAATGGCGACCACGGATTTCAGAATTCGAATCGGGGTTGGAGCCACTTCATTTGTGTATCTGGCGGAGCTTGGCGATGGAAGGTTAGGTGCTGTGAAGCGCGTAATGGAGGAGAGAGGTGGGAGCAAGAAGATGTTCTTGGATGAAGTCTCGGTTCTTCTCAGGATTTCTCACCCTAATTTGGTGGGATTGATGGGGTTCTGCCTAGAGAAAGGAGAACAACTTCTACTACTAGAGTATGTCCCCAACAAGAGCCTCTTTGATAGAATGCACACATTCCGTGGCCAATCTGAGGGCATACTCTCATGGTCCAACCGCTTGAACATTGCCCTAGACATCGCTCGTGCTCTCGACTACCTTCACTCCCAAGCCGACCCTCCTATCATACACAGAGATGTCAAGTCCTCCAACATTCTCTTGATCGACAACGATCACGCCAAACTAGCAGACTTTGGGCTATGCAAATTGGGGTACAATGATAGGTATGGCTCACAATCTCCCACCATTGTCAAGGGCTCCTTCGGCTATGTCGACACTAATTACCTTAAGACTGGCCATGTCTCATCAAAGAGCGATGTATATAGCTTTGGGGTCCTACTTCTTGAGCTAATAACCGGGCTCAGATCGATACAAGACTCTACGACGCTTGCAGAATGGACTGAGGAGGCCCGGAAGAATGATTCCATAGAGGTTTTGGTTGGATTGTTGGATCCCAAACTCAATGGGGATGTCAATGTAGAGCAGCTTCGGGTGTTGATGGAGGTGGCCAACTCGGCTTTACTTGAAAAGTCAGAAGCTAGACCAGACATGAGAGACATTGTAGATAGGATTTTGGGATGCATGGAACTTCATCAACTTCAATCTGAGTTGCCAGTTTAA 972 47.22 MEKAQRNCENYLQISNLCCTGVIRTYALEELKMATTDFRIRIGVGATSFVYLAELGDGRLGAVKRVMEERGGSKKMFLDEVSVLLRISHPNLVGLMGFCLEKGEQLLLLEYVPNKSLFDRMHTFRGQSEGILSWSNRLNIALDIARALDYLHSQADPPIIHRDVKSSNILLIDNDHAKLADFGLCKLGYNDRYGSQSPTIVKGSFGYVDTNYLKTGHVSSKSDVYSFGVLLLELITGLRSIQDSTTLAEWTEEARKNDSIEVLVGLLDPKLNGDVNVEQLRVLMEVANSALLEKSEARPDMRDIVDRILGCMELHQLQSELPV* 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18277060 18278626 - Vvi2g957 Vvi2g957 783656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g957 323 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 6 323 - -
Vvi2g957 323 SMART serkin_6 36 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g957 323 SUPERFAMILY Protein kinase-like (PK-like) 24 307 IPR011009 -
Vvi2g957 323 Gene3D Phosphorylase Kinase; domain 1 11 111 - -
Vvi2g957 323 Pfam Protein kinase domain 41 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g957 323 Gene3D Transferase(Phosphotransferase) domain 1 112 320 - -
Vvi2g957 323 ProSiteProfiles Protein kinase domain profile. 36 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g957 323 PANTHER OS01G0253100 PROTEIN 6 323 IPR045271 GO:0004714|GO:0006468
Vvi2g957 323 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g957 - - - vvi:100242493 639.032
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g957 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00909 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029850 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76552 PF00069 Pkinase 6.90E-40 CL0016 Vvi PK