Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g96 ATGGGAAAAAGTGAAGCTGAGATGTCTTCTAAATCTGATAAAATATCCTCCTCTGCAGAGGAACAGACCAACATCCATCTTCTCAACCCTGACTGGGCATCTATACAGGCATACTATGGATCTGGAGTCCCTCTTCTGGCACCACATTTCAACTCTGCAGTCCCGGGCAGTCATTTTCCTTATCCATATGTATGGGCTCCATCTCAGCCACTGATTCCACCTTATGGGGTGCCCTACACGGCAATCTACTCACATGAAGGTGTTCATGCACATCCTGCAGTTCCTCTTGTTGCAACTCCATTAAGCAAAAAAGCTCCTTCTAGATCATCAGTGGACATGGATCAAGGCGTTAGAAAGAAGTTTAAAAGATTGGATGGGCTGGCAGTACCTGTAGGCAATGTTAGCACTGAGGACGATGCCGGAGGCTCAGTCTATGAGGTGTCACAGAGTGTGAAACATGGTATTGATGGTTCTACTGATGGAAGTGATGGAAACACTGGAGCATTCCTACCCCAGAGGAATAGCGGTTCTGAGGGCATCCTTTCTACTGACAATGATGGGAACTTCCATAGGTTTGCTGGTTCCTTATCTGAAGGAGAAGCATATGCAGCTTCCCACAAGGTTTCTGTGAACTCTGTGGCCCCTACAAATGTTGCAGGAAAATCTGTCAGACCCCTTAATAGAAATGAAGAAATTCATGCAGCTTGTGTTGCTTCTAGCACTAGTGCAGGGTCACCTTTTGAAGTCTGTCAACAGGATGAACGGCAGCTGAAGCGAGAGAGGAGGAAACAGGCTAATAGAGAATCTGCTAAGAAGTCCAGGTTGAGGAAGCAGGCTGAAAATGAGGAACTGAGAATGAGATACGAAACCCTGAATGAGGAGAATAAGGCACTGAAGTTTGAAATAAGCAAGCTAACAGAGCATTTGGACAAAGTGAGGCTAGAAAATACTGCATTACGGGAGAAGCTGAAAAATAAACAGCAGCTTGAACTGCAAGGAGAGATGGCTCCATATAAGATTGAGGCTGATTTGATCCTTCCTGACAGTCCTGAGGAGGTATATAAGCTGAATGACTCCAACTCTCTTAACCAAAATGTGCAGATGGAATGTGGGATCCAAGAGAACCCAAATTCTGAAACCAAGCTCCATCAGTTATTGAAATCAAACTCTAGGACAGATGCAATTGTGGCAGGCTGA 1197 45.11 MGKSEAEMSSKSDKISSSAEEQTNIHLLNPDWASIQAYYGSGVPLLAPHFNSAVPGSHFPYPYVWAPSQPLIPPYGVPYTAIYSHEGVHAHPAVPLVATPLSKKAPSRSSVDMDQGVRKKFKRLDGLAVPVGNVSTEDDAGGSVYEVSQSVKHGIDGSTDGSDGNTGAFLPQRNSGSEGILSTDNDGNFHRFAGSLSEGEAYAASHKVSVNSVAPTNVAGKSVRPLNRNEEIHAACVASSTSAGSPFEVCQQDERQLKRERRKQANRESAKKSRLRKQAENEELRMRYETLNEENKALKFEISKLTEHLDKVRLENTALREKLKNKQQLELQGEMAPYKIEADLILPDSPEEVYKLNDSNSLNQNVQMECGIQENPNSETKLHQLLKSNSRTDAIVAG* 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 990819 996189 + Vvi2g96 Vvi2g96 782795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g96 398 Coils Coil 262 329 - -
Vvi2g96 398 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 261 276 IPR004827 GO:0003700|GO:0006355
Vvi2g96 398 SUPERFAMILY Leucine zipper domain 257 311 IPR046347 GO:0003700|GO:0006355
Vvi2g96 398 Pfam G-box binding protein MFMR 1 95 IPR012900 -
Vvi2g96 398 MobiDBLite consensus disorder prediction 156 183 - -
Vvi2g96 398 PANTHER G-BOX-BINDING FACTOR 3 1 398 - -
Vvi2g96 398 MobiDBLite consensus disorder prediction 1 21 - -
Vvi2g96 398 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 398 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vvi2g96 398 Gene3D - 257 311 - -
Vvi2g96 398 MobiDBLite consensus disorder prediction 259 279 - -
Vvi2g96 398 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 256 319 IPR004827 GO:0003700|GO:0006355
Vvi2g96 398 CDD bZIP_plant_GBF1 259 310 IPR045314 GO:0003700|GO:0006355
Vvi2g96 398 Pfam bZIP transcription factor 254 316 IPR004827 GO:0003700|GO:0006355
Vvi2g96 398 SMART brlzneu 254 318 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g96 K09060 GBF; plant G-box-binding factor - vvi:100257104 772.311
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g96 Vvi15g772 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g96 . . . . . . . . Cmo06g01064 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0830 . . . . . . . . . . . . . . . . Cma06g01037 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069983 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14626 PF07777 MFMR 1.10E-30 No_clan Vvi TF