Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g962 ATGCCTCATAGAGACAGAGGCTTCGAACAGGCCCACTTTTGTCATGTTATTTATTTCATTAAGTCTTTTGCTGCAAGACCCACCAACGTGACTGCCAGCATCGCCCATTGTTTAGCCTTCAAGATGGGTGCTCTTGCTCACTTGCCCACTTCCACCTCTCTCCTCACTGCCTATTCAAGAGCTGCAGATTTCAGCTCTTCATGGGCTCTGTTTGATGAAATTCTTTACCGGGATGTGATTCTTTGGAATGCTATGATCACTGCCTCGGTTGAAAATCAGTGTTTTGGAGTTGCAGTGAATTTGTTTGTGGAGCTGATGGGAGAAGGGGTTGGGCTTGATTCAACCACCTTGTTGATTGTTGTGTCAGCCTCATCCCACATGGGTAACTTGACACAAGGCCGAGTTCTTCATGGTATAAGCTTCAAAACTGGGTTGCTTTCGGATTCATTTTTGTGTAATGCGCTCATAGACATGTATGCAAAATGCGGTGAATTGAGCTCATCAGAGTGTGTGTTTGGAGGGATGGAATATAGGGACATAATCTCTTGGAATTCAATGATGAGAGGATGTGCTTATAATAATTATCCTAAGAAGTCCTTGTGGTATTTCAAGAAGATGGCTTATTCCAGCGAACAAGCTGATAATGTGAGCCTGACATGTGCTGTCTCAGCATCTGCACTTCTGGGAGAGCTGAGTTTTGGGCAAGTCATTCATGGGTGGGGAATCAAATTGGGTTACAAAGACATATCTCATAACTCTTTTGAGAATTCTCTTATTTCACTATATTCACAATGTAGAGATATCCAGGCTGCAGAGATATTGTTTAAAGAAATGAAATACAAGGATATCGTTTCATGGAATGCAATGCTTGATGGATTGGCCTTGAACCAGAGGATTTGGGAAGCATTTGATCTTCTCCATGAAATGCAATTATTGGGGTGTGTTCAACCTGATTCAGTTACTGTAGTTATCATCATTCCACTTTGTGCAGAGCTAATGCTCTTGAGAGAAGGGCGGGCTGTTCATGGGTTAACACTTCGGAGAGAAATGGGATTGGATTTTTCAGTTACTAACAGCCTGATTGACATGTACTCAAAGTGCAAAGATGTGAAGAGGGCTGAGCACAATGGGCACAGTAGAGAGGCTCAACATTTATTTAGACAACTGCTCCAATCATATTCACAGTGCAGCTTGTCAACTCTTTTGGCGATTCTCCCTTCCTGTGATTCCTCTGAATTCCTGCAGTTTGGGGAATCCATTCACTGCTGGCAGCTGAAATTGGGATTTGCAAACAATCCTCTAGCAGTTAATTCCCTCATGTTAATGTATATTAATTGTGGAGATCTTGTAGCCTGTTTCTCATTGCTACAAACAGTTTCAGCTGCAGCCGATATTGTTTGTTGGAACACTGTCATGGCTGGTTGCACTCAGAATGGCCATTTCTGGGAAGCTTTAAAAGCTTTCAACTTAATGAGGCAGGACCCTGATGTCTGTCATGATTCTGTTGCCCTCTTCAATGTTATATCAGCTTGTGGAAATCTTGAGCTGTTGTTTGCAGGGGGATCACTTCATGGTCTTGCCCTTAAAACTTTAATGGAATCCGATATTCGTGTACAGAATGCATTAATTACTATGTATGGAAGATGTGGGGAGATTGAGAATGCAAGAATAATTTTCGGGTTCAGTTGCAATCGCAATTTATGTTCATGGAATTGCATGATCTCTGCTTTTTCTCAGAACAAGGATGGTAGAAGAGCGCTAGAACTATTTTGTCATATTGAGTTTGAGCCAAATGAGATCACCATTGTTGGCATTCTCTCAGCTTGTACACAACTTGGAGTTCTAAGGCATGGGAAACAGATTCATGGTCATGTGATTCGGTCTAGGTTACAGGGAAATAGTTTTGTATCTGCAGCGCTTGAGGATATGTACAGCAACTGTGGAAGACTGGACACTGCCTTTCAAATATTTCAAAGTTCACCTGAAAGGTCAGTTGCAGCTTGGAATTCTATGATATCTGCATTCGGGTTCCATAGCAATGGTGGGAAGGCGATTGAACTCTTCCATGAAATGCGTGAGTGTGGAACTAGACCGACTAAAAGCACTTTTATAAGCCTTCTATCAGCTTGCAGCCACTCAGGGCTAGTCAATGAAGGCCTTTGGTACTATAGCAACATGTTGGAGTTGTTCAATGTGGAAGCAGACACTGAGCATCATGTGTGTATGGTTGATATGCTGGGTAGAGCAGGAAGGCTTGGTGAGGCCTATGAGTTTATCAGGCAGATGCCAACTCAACCAGAACCAGGTGTCTGGGGAGCCCTGCTGAGTGCTTGCAGCTATCATGGGGATCTCAAGATGGGGAGAGAAGTTGCAGAGCTTCTCTTTGAGCTGGAACCTGAAAATGTCGGTTATTACATTTCACTGTCGAATATGTATGTTGCTGCAGGAAGATGGAAAGATGCTGTAGAGTTGAGGAGAATAATACAGGACAAAGGATTAAAGAAGCCAGCAGCTTACAGTCTTATTGATGTTGGAATGGGTTTGTATTTGCCATTTGGGTTGAGCAAATTTTTTATATTTCTTACCTAA 2589 42.56 MPHRDRGFEQAHFCHVIYFIKSFAARPTNVTASIAHCLAFKMGALAHLPTSTSLLTAYSRAADFSSSWALFDEILYRDVILWNAMITASVENQCFGVAVNLFVELMGEGVGLDSTTLLIVVSASSHMGNLTQGRVLHGISFKTGLLSDSFLCNALIDMYAKCGELSSSECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAVSASALLGELSFGQVIHGWGIKLGYKDISHNSFENSLISLYSQCRDIQAAEILFKEMKYKDIVSWNAMLDGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIPLCAELMLLREGRAVHGLTLRREMGLDFSVTNSLIDMYSKCKDVKRAEHNGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCDSSEFLQFGESIHCWQLKLGFANNPLAVNSLMLMYINCGDLVACFSLLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCHDSVALFNVISACGNLELLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGEIENARIIFGFSCNRNLCSWNCMISAFSQNKDGRRALELFCHIEFEPNEITIVGILSACTQLGVLRHGKQIHGHVIRSRLQGNSFVSAALEDMYSNCGRLDTAFQIFQSSPERSVAAWNSMISAFGFHSNGGKAIELFHEMRECGTRPTKSTFISLLSACSHSGLVNEGLWYYSNMLELFNVEADTEHHVCMVDMLGRAGRLGEAYEFIRQMPTQPEPGVWGALLSACSYHGDLKMGREVAELLFELEPENVGYYISLSNMYVAAGRWKDAVELRRIIQDKGLKKPAAYSLIDVGMGLYLPFGLSKFFIFLT* 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18342283 18345229 + Vvi2g962 Vvi2g962 783661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g962 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 664 698 IPR002885 -
Vvi2g962 862 PANTHER OS07G0578800 PROTEIN-RELATED 30 166 IPR045215 GO:0003723|GO:0009451
Vvi2g962 862 PANTHER OS07G0578800 PROTEIN-RELATED 166 371 IPR045215 GO:0003723|GO:0009451
Vvi2g962 862 PANTHER OS07G0578800 PROTEIN-RELATED 382 843 IPR045215 GO:0003723|GO:0009451
Vvi2g962 862 Gene3D Tetratricopeptide repeat domain 250 374 IPR011990 GO:0005515
Vvi2g962 862 Gene3D Tetratricopeptide repeat domain 637 841 IPR011990 GO:0005515
Vvi2g962 862 Gene3D Tetratricopeptide repeat domain 35 137 IPR011990 GO:0005515
Vvi2g962 862 Gene3D Tetratricopeptide repeat domain 375 519 IPR011990 GO:0005515
Vvi2g962 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Vvi2g962 862 Pfam PPR repeat 741 763 IPR002885 -
Vvi2g962 862 Pfam PPR repeat 569 592 IPR002885 -
Vvi2g962 862 Pfam PPR repeat 466 493 IPR002885 -
Vvi2g962 862 Pfam PPR repeat 152 179 IPR002885 -
Vvi2g962 862 Pfam PPR repeat 181 206 IPR002885 -
Vvi2g962 862 Pfam PPR repeat family 281 328 IPR002885 -
Vvi2g962 862 Pfam PPR repeat family 664 711 IPR002885 -
Vvi2g962 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Vvi2g962 862 Pfam E motif 781 837 IPR046848 -
Vvi2g962 862 Gene3D Tetratricopeptide repeat domain 138 232 IPR011990 GO:0005515
Vvi2g962 862 PANTHER OS01G0938000 PROTEIN 382 843 - -
Vvi2g962 862 PANTHER OS01G0938000 PROTEIN 166 371 - -
Vvi2g962 862 PANTHER OS01G0938000 PROTEIN 30 166 - -
Vvi2g962 862 TIGRFAM PPR: pentatricopeptide repeat domain 667 699 IPR002885 -
Vvi2g962 862 TIGRFAM PPR: pentatricopeptide repeat domain 569 593 IPR002885 -
Vvi2g962 862 TIGRFAM PPR: pentatricopeptide repeat domain 466 494 IPR002885 -
Vvi2g962 862 TIGRFAM PPR: pentatricopeptide repeat domain 284 318 IPR002885 -
Vvi2g962 862 Gene3D Tetratricopeptide repeat domain 520 624 IPR011990 GO:0005515
Vvi2g962 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 494 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g962 - - - vvi:100246073 1699.1
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g962 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023697 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 3