Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g963 ATGTTAGAATTAGACTTGCTATTAATGAGAAGCCGCAGAAGAAGAAGAGAGGGAAGAGCGATGGCGGATCGATTGACCAGAATCGCCATAGTCAGTTCTGACCGCTGCAAGCCCAAGAAGTGCCGTCAGGAATGCAAAAAAAGCTGTCCAGTTGTCAAAACTGGTAAACTGTGTATTGAGGTAACGCCTGCATCGAAGATTGCCTTCATATCGGAGGAATTGTGCATTGGATGTGGTATCTGCGTCAAGAAATGCCCATTTGAAGCAATTCAGATCATCAATCTTCCAAAAGATTTGGATAAAGATACCACTCATCGTTATGGGCCAAACACTTTTAAATTGCATAGACTGCCAGTGCCCAGGCCAGGCCAAGTTCTGGGTTTGGTTGGAACCAATGGCATTGGAAAATCTACTGCCCTCAAAGTTTTGGCTGGCAAATTGAAGCCCAACTTGGGTCGATTCAATAACCCTCCTGATTGGCAGGAAATATTGACATATTTCCGAGGATCTGAGCTGCAGAATTATTTCACCCGAATCCTTGAAGATAATCTCAAGGCAATCATCAAGCCTCAGTATGTTGATCATATTCCAAAAGCAGTCCAAGGAAATGTTGGTCAAGTGCTTGACCAAAAGGATGAGAGGGATATGAAGGAAGAACTTTGTTTTGATCTTGATCTTAATCAGGTTATTGACCGTAACGTGGGAGATTTATCGGGTGGAGAGCTCCAGAGGTTTGCTATTGCTGTTGTTGCAATACAGAATGCAGAGATATATATGTTTGATGAACCTTCAAGTTATCTTGATGTGAAACAGAGGCTTAAAGCTGCCCAAGTTGTTCGATCTCTGCTCAGGCCTAATAGCTATGTAATCGTCGTGGAACATGATCTTAGCGTCCTAGATTATTTGTCAGATTTCATTTGCTGCCTTTATGGGAAGCCGGGTGCATATGGAGTTGTTACCCTTCCCTTCTCTGTTAGAGAAGGAATCAATATATTTTTAGCTGGATTTGTTCCCACAGAGAATCTACGATTCCGGGAGGAATCTCTCACTTTCAAGGTTGCTGAGACTCCACAGGAGAGTGCTGAGGAAATTGAGACATATGCACGATATAAATACCCAACCATGACAAAAACTCAGGGCAATTTCAAACTTCGTGTGGTTGAGGGAGAATTTACAGATTCTCAGATTATTGTAATGCTGGGTGAGAATGGGACAGGGAAGACAACATTTATCCGGATGCTGGCTGGTTTACTGAAACCTGATTCTGTAGAAGACTCTGACGTGGAGATTCCTGAGTTTAATGTTTCTTACAAGCCCCAGAAGATCAGCCCAAAATTTCAATCTACAGTTAGACACTTGTTGCATCAAAAGATACGTGATTCATATATGCATCCTCAGTTTGTCTCAGATGTCATGAAACCTCTTCTGATTGAGCAATTGATGGATCAAGAAGTTGTGAACCTCTCTGGTGGAGAGTTGCAACGAGTCGCACTATGTCTATGCCTTGGAAAGCCTGCAGATATTTATTTGATAGATGAACCAAGTGCATATCTTGACTCAGAACAGCGTATAGTTGCATCAAAAGTCATTAAGAGGTTTATCCTCCACGCAAAGAAGACTGCATTTGTGGTTGAGCATGATTTCATAATGGCAACTTATCTTGCAGACAGAGTTATAGTGTATGAGGGGCAACCATCAGTGGATTGTACTGCCAATACTCCTCAGTCATTGTTGACTGGGATGAATCTTTTCTTATCTCATCTAGATATCACATTTAGGCGGGATCCAACAAATTTCCGCCCAAGAATCAACAAATTGGAGTCAACCAAGGACAGGGAGCAAAAATCTGCTGGATCATATTATTACCTGGATGACTGA 1878 42.12 MLELDLLLMRSRRRRREGRAMADRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPASKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKEELCFDLDLNQVIDRNVGDLSGGELQRFAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFREESLTFKVAETPQESAEEIETYARYKYPTMTKTQGNFKLRVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSVEDSDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYMHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCTANTPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLESTKDREQKSAGSYYYLDD* 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18345601 18354600 - Vvi2g963 Vvi2g963 783662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g963 625 Pfam 4Fe-4S binding domain 69 91 IPR017896 -
Vvi2g963 625 ProSitePatterns ABC transporters family signature. 488 502 IPR017871 GO:0005524
Vvi2g963 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 562 IPR027417 -
Vvi2g963 625 ProSitePatterns ABC transporters family signature. 237 251 IPR017871 GO:0005524
Vvi2g963 625 Gene3D - 357 623 IPR027417 -
Vvi2g963 625 PRINTS ABC transporter family E signature 44 59 IPR013283 -
Vvi2g963 625 PRINTS ABC transporter family E signature 72 96 IPR013283 -
Vvi2g963 625 PRINTS ABC transporter family E signature 99 119 IPR013283 -
Vvi2g963 625 PRINTS ABC transporter family E signature 127 152 IPR013283 -
Vvi2g963 625 PRINTS ABC transporter family E signature 160 176 IPR013283 -
Vvi2g963 625 PRINTS ABC transporter family E signature 176 202 IPR013283 -
Vvi2g963 625 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 21 625 IPR013283 -
Vvi2g963 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 311 IPR027417 -
Vvi2g963 625 CDD ABC_RNaseL_inhibitor_domain2 370 618 - -
Vvi2g963 625 SMART AAA_5 393 566 IPR003593 -
Vvi2g963 625 SMART AAA_5 122 314 IPR003593 -
Vvi2g963 625 Pfam Possible Fer4-like domain in RNase L inhibitor, RLI 26 57 IPR007209 -
Vvi2g963 625 PANTHER - 21 625 - -
Vvi2g963 625 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 75 86 IPR017900 -
Vvi2g963 625 CDD ABC_RNaseL_inhibitor_domain1 98 352 IPR034348 -
Vvi2g963 625 Pfam ABC transporter 387 516 IPR003439 GO:0005524
Vvi2g963 625 Pfam ABC transporter 122 264 IPR003439 GO:0005524
Vvi2g963 625 Gene3D - 13 352 IPR027417 -
Vvi2g963 625 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 66 95 IPR017896 -
Vvi2g963 625 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 90 335 IPR003439 GO:0005524
Vvi2g963 625 SUPERFAMILY 4Fe-4S ferredoxins 20 165 - -
Vvi2g963 625 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 588 IPR003439 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g963 K06174 ABCE1, Rli1; ATP-binding cassette, sub-family E, member 1 - vvi:100249488 1212.98
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g963 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004842 2 2 2 2 2 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39