Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g967 ATGGAGGAGGAGGAGGGAGGAGGAATCAGGTTGAGCAAGAGGCTGTCCGACAAGGGGGGTGAAGTTGATTACAAGGACAAGGCGGGCACTGCGTGGAGCCATTCCTACCTCAACCAGAAGCCATGGCACCCACTCTCCTACCCAAACCAACGCCGCAAGTGGATCGCAGAGCAGACCCACGCCCAGCGGGACCGTCGTGCCCAGGAAGTGGCCAGAGAGTTTGCTCAGGAGCAAGAATTCTTCCGCCAGACCGCTCTTATCTCCAAGAAAGAAAAGGAAAAGGTGGAGATGATGAAGGCTGTTAGTTTCATGTATGTTCGCCCACCTGGTTTTAATGCAGAAAGTGCTAAAGCTGCTGAAATTGCTGATGAGAGGAGAAGGCTAGAGCAGGATAGCCCCTCCCATGATGGCCCTTCCACTGCAATGCTAGCCAAATCCGTGGCTGGTAGAAATCATCCTGGAGAAGAGAGGAAGAAACCACGGCCCAAAGATGTGTTTGGTCGTCCTCTGCCAACTGAAGAAGAATTTGAAGTCCTCAAAAATGCACCAAGACTGGAGACAGGTGTTCCTGCAAGGGTTAAACCATTTGGGGTTGAAGTGCGCAATGTGAAATGTGTAAGATGTGGAAATTATGGTCACCAAAGCGGTGATCGTGAATGTCCATTGAAGGATGTTATTATGCCCAATGAAGAGAGTCGATTGAAAAGAGATGACCCTTTAACTGCTATCCTTGCTCATACAGATACTAGTGAGCCTCTGAAATGGGAGCTGAAGCAAAAACCAGGAATTAGTCCTCCCCGTGGAGGTTTTAAACCAGATGATCCCAACCAGCAAATAGTTTCCGAGGATATATTTGATGAGTATGGAGGGTTCCTTAGTGGGGAGAATATCATTCCTGAGTTGCTGACCAACTTCTCATCAAGCAAACCTAAGAAGAGGAAGTCCTCAAAAAAAGGTAAGCACAAGAGGCCATCATCACCAACCAGCAGTCAGCCAAAGGATCCTCAGCAGGATGAAGCAGAGAGAAGGTCAAGGAAGGATAACAAACATAGGAAGAAGAAACGAAATCATTCTGAATCTAGTTCATCAGATGATGATTCAGAGGATTATGGGGGGAGGAGGTCAAAGAAGGATAACAAATATAGGAAGAAGAAGCAGAATGATTCTGAATCCAGTTTGTCAGACAATTCAGAGGATGATAGAGAGAGGAGGTCAAAGAAAGATAACATATATAAGAACAAGAAGCGAATACAAAATCGTTCTGAACCCTGTTCATCAGACAATTCTGATGACAATGAGAAGAGGAGGCCAAAGAAAGATGACAAATATAGGAAGAGGCGAAATCATTCTGAATCCAGTTCAGATAATCCAGGGGATGATGGGAAGAGGTCAAATAAGGTTTACAATTATAGGAAGAAGAGAAATAGCGACTACTCCAGTTCATCAGACAACTCACAGTTTGATAGGCATCACAAAAAGAGCAGAAACAAGCATTCTGACAGGAATTCATCTCAAAATATTGACCCTGATAGGCATTATAGAAGTAAACACCATCATCGCCATCATCATTCCCATCATCACTGA 1584 45.14 MEEEEGGGIRLSKRLSDKGGEVDYKDKAGTAWSHSYLNQKPWHPLSYPNQRRKWIAEQTHAQRDRRAQEVAREFAQEQEFFRQTALISKKEKEKVEMMKAVSFMYVRPPGFNAESAKAAEIADERRRLEQDSPSHDGPSTAMLAKSVAGRNHPGEERKKPRPKDVFGRPLPTEEEFEVLKNAPRLETGVPARVKPFGVEVRNVKCVRCGNYGHQSGDRECPLKDVIMPNEESRLKRDDPLTAILAHTDTSEPLKWELKQKPGISPPRGGFKPDDPNQQIVSEDIFDEYGGFLSGENIIPELLTNFSSSKPKKRKSSKKGKHKRPSSPTSSQPKDPQQDEAERRSRKDNKHRKKKRNHSESSSSDDDSEDYGGRRSKKDNKYRKKKQNDSESSLSDNSEDDRERRSKKDNIYKNKKRIQNRSEPCSSDNSDDNEKRRPKKDDKYRKRRNHSESSSDNPGDDGKRSNKVYNYRKKRNSDYSSSSDNSQFDRHHKKSRNKHSDRNSSQNIDPDRHYRSKHHHRHHHSHHH* 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18420865 18426824 - Vvi2g967 Vvi2g967 783666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g967 527 MobiDBLite consensus disorder prediction 310 324 - -
Vvi2g967 527 MobiDBLite consensus disorder prediction 300 527 - -
Vvi2g967 527 MobiDBLite consensus disorder prediction 118 133 - -
Vvi2g967 527 Pfam N-terminal domain of CBF1 interacting co-repressor CIR 42 77 IPR019339 -
Vvi2g967 527 SMART Cir_N_3 41 77 IPR019339 -
Vvi2g967 527 PANTHER CBF1 INTERACTING COREPRESSOR CIR 10 525 IPR040014 GO:0003714
Vvi2g967 527 Coils Coil 111 131 - -
Vvi2g967 527 MobiDBLite consensus disorder prediction 513 527 - -
Vvi2g967 527 MobiDBLite consensus disorder prediction 150 171 - -
Vvi2g967 527 MobiDBLite consensus disorder prediction 357 490 - -
Vvi2g967 527 MobiDBLite consensus disorder prediction 252 278 - -
Vvi2g967 527 MobiDBLite consensus disorder prediction 1 22 - -
Vvi2g967 527 MobiDBLite consensus disorder prediction 116 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g967 K06066 CIR; CBF1 interacting corepressor - vvi:100242608 915.605
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g967 . . . . . . Bma07g01213 . . . . . . . . . Cpe02g00574 . . . . . . . . . . . . . . . . . Cone9ag0342 . . . . . . . Bda09g00474 Bpe08g01055 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011573 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 28