Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g968 ATGCCCCTCAACTGCATAGCCCCAAAACCGGAAAATCAAGGCAACATCCCCATGGAAGGTTTGTCCAGGACATCTGAATCCGACAACTCAGCCGTCCTTACCTACCCCATGCAAACCAATTCACAATCTATTCTACAACACACCTTGTACTCCATAAATCTCAAGTTTGAAGAGGTCGTTTACAAAGTTAAATTAGAGCAGAAAGGGTTTTGCTGGGGGGGTGCATGGAGCACCAGAGACAAGACAATACTGAATGGAATAACAGGCATGGTTTGTCCAGGAGAGATACTAGCGATGTTAGGGCCATCTGGGAGCGGCAAAACCACACTCCTTACAGCCCTTGGAGGCCGTCTCAATGGTAAGTTATCAGGCAAGATCACGTACAATGGTCAGCCTTTCTCTGGCGCTGTCAAACGAAGAACAGGATTTGTTGCACAGGACGATGTTCTCTACCCGCATCTTACTGTAACTGAAACCCTCCTATTCACTGCACTGCTAAGGCTGCCAAAAAGCTTGGCACGAAATGAGAAAGCCCAGCATGTGGAGAGGGTCATCTCTGAGTTGGGATTAACACGGTGTCGGAACAGCATGATTGGGGGACCTCTCTTTAGGGGCATATCAGGTGGGGAGAAGAAGAGGGTGAGCATAGGCCAAGAAATGCTAATCAACCCAAGCTTGCTGTTGCTAGATGAGCCCACCTCAGGTTTGGACTCGACCACTGCTCAACGGATCCTAACCACCATTAAACGACTGGCTAGTGGGGGTAGAACCGTGGTCACCACTATTCACCAGCCCTCAAGCCGCCTCTACCACATGTTTGATAAGGTAATCTTGCTTTCTGAGGGCTGCCCCATCTACAATGGTCCTGCATCAACTGCCATGGAATACTTCTCCTCAGTTGGTTTCTCCACATGCGTGACTGTCAATCCAGCTGATCTCTTACTCGATCTTGCTAACGGAATTAGCCCTGATTCCAAGCAAGCAGCGGAGCAAAGTGAGAACATGGAACAAGAGCAGAAGTCAGTGAGAGAAGCTCTCATCTCCGCCTATGAAAAGAACATTTCTACTAGGCTGAAAGCCGAGCTCTGCAGTGTGGATGTCAATAACTACAATTATACAAAGGACGGTCGTGCAAGAAATAACTTCAAGGCAGATCAATGGTGCACAAGCTGGTGGCATCAGTTCATGGTGCTGCTTCAGAGGGGACTAAGGGAAAGGAGGTACGAAGCCTTCAACAGGCTAAGAATCTTCCAAGTCATAAGTGTCGCTGTGCTAGGCGGTCTTCTATGGTGGCACACCCCAACATCCCACATTGAGGATCGAATAGCCCTGCTCTTCTTCTTCTCTGTGTTCTGGGGGTTCTACCCACTCTACAATGCAGTCTTTACATTTCCCCAAGAAAGAAGAATGCTGATCAAGGAACGATCATCTGGCATGTACCGCCTTTCATCATACTTTCTAGCCAGAACTTTTGGAGACCTGCCACTTGAGCTTGCTCTCCCAACAGCCTTTGTCATCATAATCTACTGGATGGGTGGACTAAAACCTGATCCCATCACTTTCATCCTTTCTCTTCTTGTCGTTCTCTACAATGTCCTTGTCTCCCAAAGTCTGGGCTTAGCCATTGGCGCAATACTGATGGACATAAAACAAGCAACTACTTTAGCCTCTGTTACAACCCTAGTGTTCCTGATCGCGGGCGGATACTATGTGCAACAAATCCCTCCCTTCATTGTCTGGCTAAAGTACTTGAGCTATAGCTACTACTGCTATAAGCTTCTCCTCGGGATACAGTACAGCGAGGATGACTACTACGAGTGCTCCAAGGGGGTGTTTTGTCGGGTTGTAGATTTTCCTGCAGTCAAATCCGTGGGGCTCAACCATTTGTGGATTGATGTGTGCATTATGGCCCTGATGTTGGTGGGGTATCGACTTGTTGCTTATCTGGCATTGCATCGGGTACAGTTGAGGTGA 1974 48.07 MPLNCIAPKPENQGNIPMEGLSRTSESDNSAVLTYPMQTNSQSILQHTLYSINLKFEEVVYKVKLEQKGFCWGGAWSTRDKTILNGITGMVCPGEILAMLGPSGSGKTTLLTALGGRLNGKLSGKITYNGQPFSGAVKRRTGFVAQDDVLYPHLTVTETLLFTALLRLPKSLARNEKAQHVERVISELGLTRCRNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRILTTIKRLASGGRTVVTTIHQPSSRLYHMFDKVILLSEGCPIYNGPASTAMEYFSSVGFSTCVTVNPADLLLDLANGISPDSKQAAEQSENMEQEQKSVREALISAYEKNISTRLKAELCSVDVNNYNYTKDGRARNNFKADQWCTSWWHQFMVLLQRGLRERRYEAFNRLRIFQVISVAVLGGLLWWHTPTSHIEDRIALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTFGDLPLELALPTAFVIIIYWMGGLKPDPITFILSLLVVLYNVLVSQSLGLAIGAILMDIKQATTLASVTTLVFLIAGGYYVQQIPPFIVWLKYLSYSYYCYKLLLGIQYSEDDYYECSKGVFCRVVDFPAVKSVGLNHLWIDVCIMALMLVGYRLVAYLALHRVQLR* 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18431307 18435037 - Vvi2g968 Vvi2g968 783667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g968 657 Pfam ABC-2 type transporter 394 599 IPR013525 GO:0016020|GO:0140359
Vvi2g968 657 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 31 653 - -
Vvi2g968 657 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 31 653 - -
Vvi2g968 657 Pfam ABC-2 type transporter 263 353 IPR043926 GO:0140359
Vvi2g968 657 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 298 IPR027417 -
Vvi2g968 657 Gene3D - 74 301 IPR027417 -
Vvi2g968 657 MobiDBLite consensus disorder prediction 1 24 - -
Vvi2g968 657 SMART AAA_5 93 283 IPR003593 -
Vvi2g968 657 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 54 306 IPR003439 GO:0005524
Vvi2g968 657 Pfam ABC transporter 84 234 IPR003439 GO:0005524
Vvi2g968 657 Coils Coil 325 345 - -
Vvi2g968 657 ProSitePatterns ABC transporters family signature. 206 220 IPR017871 GO:0005524
Vvi2g968 657 CDD ABCG_EPDR 51 288 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g968 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - vvi:100247745 1300.42
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g968 . . . . . Bpe07g00048 . . Cmo06g00554 Cmo16g00550 . . . . . Cpe14g00425 . . . . . . . . . . . . . . . . . . Cone9ag0341 . . . . . . . . . . . Bma12g00629 . . . Cma06g00550 Cma16g00503 Car06g00489 . Cpe01g00545 . . . . . . . . . . . . . . . . Csa04g00716 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001139 3 3 3 3 3 2 2 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 3 3 1 3 3 3 3 79