Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g97 ATGGATGTATCAGCTGGGGGTCACAGAGTAGCAGCTGAAGTTGTAAAGGCCAGCGATGGAATTGATCAAGTTGTGCTCCAAAACGGTCGAGGGGCTTCTGCTAGGGTTAGCTTGCATGGAGGCCAGGTTCTTTCATGGAAAACCCATTGGGGAGAAGAACTGTTATTCACAAGTAGTAAGGCGATCTTCAAGCCACCAGTAGCAGTGAGAGGAGGAATTCCTATTTGTTTTCCACAGTTTGGAAGCCATGGAACGCTGGAGCAACATGGATTTGCTAGTAACAAGATTTGGATTATCGATGATAATCCTCCTCTGCTGCCTCCCAATGATTCCAATGGCAAAGCCTATGTTGACTTGCTGCTCAAACCAACCGAAAATGATCTGAAGTTTTGGCCACACAGTTTCGAGTTTCGTCTTAGGGTGTCTCTGAATGTGGATGGGCATCTAACCCTAATATCACGCATTAGGAACGTCGATGGCAAGCCTTTTAGTTTCTCCATTGCGTTTCATACATATTTCTCCATATCAGACATCAGCGAAGTGAGGATAGAGGGGTTGGAGACTCTCCACTATCTTGACAACTTACTCCAGAAAGAGCGTTTCACGGATCAAGGAAATACGTTAACATTTGAATCTGAGGTGGATCAAGTTTATGTTAATTCTCCAGATATAGTTGCAGTTTTTGATCATGAAAACAAGAGAACATTTTTCATAAAGAAGCAAGGACTTCCAGATGTGGTGGTGTGGAATCCATGGGACAAGAAAGCCAAGGCCTTGGTTGATTTTGGGGATGATGAGTACAAACAGATGCTGTGTGTTGATGGGGCAGCAATCGAGAAACCGATCACCTTGAGGCCAGGAGAGGAATGGACAGGCAGGCTAGAAATTTCTGTCATCCCCTCAACTTAA 909 44.66 MDVSAGGHRVAAEVVKASDGIDQVVLQNGRGASARVSLHGGQVLSWKTHWGEELLFTSSKAIFKPPVAVRGGIPICFPQFGSHGTLEQHGFASNKIWIIDDNPPLLPPNDSNGKAYVDLLLKPTENDLKFWPHSFEFRLRVSLNVDGHLTLISRIRNVDGKPFSFSIAFHTYFSISDISEVRIEGLETLHYLDNLLQKERFTDQGNTLTFESEVDQVYVNSPDIVAVFDHENKRTFFIKKQGLPDVVVWNPWDKKAKALVDFGDDEYKQMLCVDGAAIEKPITLRPGEEWTGRLEISVIPST* 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1000292 1003016 + Vvi2g97 Vvi2g97 782796

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g97 302 PIRSF PHexose_mutarotase 8 301 IPR025532 -
Vvi2g97 302 CDD D-hex-6-P-epi_like 24 297 IPR025532 -
Vvi2g97 302 Gene3D - 7 300 IPR014718 GO:0030246
Vvi2g97 302 PANTHER APOSPORY-ASSOCIATED PROTEIN C-RELATED 4 302 - -
Vvi2g97 302 Pfam Aldose 1-epimerase 22 296 IPR008183 GO:0005975|GO:0016853
Vvi2g97 302 PANTHER GLUCOSE-6-PHOSPHATE 1-EPIMERASE 4 302 - -
Vvi2g97 302 SUPERFAMILY Galactose mutarotase-like 18 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g97 K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] - vvi:100248350 588.956
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g97 Vvi15g771 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g97 Blo02g01136 . . Bda08g00488 Bpe05g00676 . . . . Cmo16g00612 . . . . . Cpe14g00477 . . . . . . . . Cla07g01406 Cam07g1507 Cec07g1604 Cco07g1561 Clacu07g1497 Cmu07g1467 Cre07g1843 . . . . . . . Cme07g01587 . . . . . . Bma05g00849 . . . . Cma06g01035 Cma16g00563 . . . . . . . . . . . . . . . . . . . Csa04g00635 Chy07g01178 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000273 4 7 4 5 2 4 5 4 4 4 4 4 6 4 5 6 4 8 6 4 4 4 4 4 4 4 4 15 8 4 149