Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g972 ATGCTCGTCTTTAAACCCGCTTCTCTCTCTAAATCTTCACATACCCATCTTCTCCATTTATCTCACCCATTAGGCAGAGTGGAAGGCAAGGAAATGAACCCTTTGTTTTGCCCTTTCCTCTCCTCAACATTACCCCACCCAAAGCCCCTCGTCTCTCCTTCCTTGACGACTACTAGACCATCATCTTCTCCTTATCCTCCCTTCCTTCACATCTCTGCCATCAGAAATGTTGAAGATAAACTCCACTCCACCTTTTATGCAACCCCTACAACTTCCCAATTCCCAGAGATACCAACGACGGTGATTACAGCGAAGAAACGACCAGTCCCGTCCCTTCTGGTTACCATCTTTAATGGATTGGACGATTTCATCAACAACTTCATAGGCCCTCCACTCCCACCCTCCATAGACCCAAAGCATGTGCTCTCTGGTAACTTCGCTCCCGTTGACGAGCTCCCCCCTACCGAGTGTGAGGTGATAGAGGGCTCACTCCCTCCCTGCCTCGATGGCGCTTACATCCGCAATGGCCCCAACCCCCAGTTCTACCCACGTGGCCCTCACCATCTCTTTGATGGTGATGGCATGCTTCACTCCATCCGAATATCCCATGGCCGACCCATCTTCTGCAGCCGTTACGTTAAGACTTACAAATACATCATCGAGAAACGTGCTGGCTCTCCCTTTGATCCCGTCAACGGGGTTGGTCTCGCCAACACCAGCGTAGCTTTCTTCTGTGGCCATCTCTACGCACTAGCTGAGTCTGATCTCCCTTATGCCGTTCGATTGACGCCTGATGGGGATATCAAAACTCTGGGCCGCTACGATTTTGATGGGAAACTCTCCATGAGCATGACCGCGCACCCCAAGATTGATCCCAGCACCGGAGAGGCATTTGCTTTTCGATACAGCCCTGTGCGTCCATTCCTAACCTACTTCCGGTTCGATGCCCAGGGAAAGAAACAACCGGACGTCCCAATTTTCTCCTTGTCTTGTCCATCTTTCTTCCATGATTTTGCAATCACCAACAGGTACGCCATATTTCCAGATATCCAGATGTGGATGAACCCGGTGAAAATGATCATCAGAGGAGGATCGCCAGTGGGTACAGATCCCACCAAAGTACCAAGAAAAGTGAGGATAGATCTGAAAACGGGGACAGTGACGAGGCATCGGCTATCACAGTGGAATCTGGAATTTGCGGTGATAAACCCAGGGTACTTGGGGAAGAAGAACAGATATGTATACTCAGCAGTAGGTGATCCTTTGCCCAAAATATCAGGAATTGTGAAGCTGGACGTATCACGAAGTGATCGGCGCCAGGAGTTCTCCGCCAGGAGAGTCTCCTCTCACCGACCAGGGTCTAGTCAAGTGAAATTTGCCTCCTTGAAGAGAATCCAACCGAACAAAATGGACGCCTTCTCTTCCTCCTTCCTCTCATCTACTTTCACTTTCCCTTCCCTCACAACAAGACCACCAATCGCCCCATCATCACTGCCCCAAATTCCTTCTCTTAACATCTCTGCCGTCAGAATCGAAGAAAAACAACCACAAAGCTTGACTGCAGAAACATCATCCCAGTCTTCCAAGACCCAAGTCCACAAACCTCCACCACCACCACCCCGACGAGCTGCTTTGCCAACCAGAAACATACCCAAAAAAGGAGCTGCAGAGCCGTCCCTGCCGGTCACCATTTTTAACGCACTGGACGATGTCATCAACAATTTCATAGACCCTCCACTCCGGTCCTCCGTAGACCCAAGGTACGTTCTCTCTCAAAACTTCGCCCCAGTGGAAGAGCTGCCGCCCACAGAATGTGAGGTAACAGACGGTTCGCTCCCACCATGGCTGGATGGCGCTTACATTCGCAACGGCCCCAATCCGCAGTTCCTTCCCCGTGGTCCTTATCACCTCTTTGATGGCGATGGCATGCTCCACTCCATCAGAATTTCCCAAGGCCGAGCCATTCTCTGCAGCCGTTATGTTAAGACTTACAAGTACACCATTGAGCGCCGCGCTGGCTCTCCAATTCTTCCTAATTTTAATCCCACTCTGGGTCGGCATGATTTTGATGGGAAGCTGGTCATGAGCATGACAGCTCACCCTAAGGTAGATCCAGAGACCGGAGAGGCGTTTGCTTTCCGTTACGGGCCAGTGCCTCCATTCCTAACCTACTTCCGATTCGATGCTCAAGGGAGGAAACAACCTGATGTCCCAATCTTCTCACTGACTAGTCCATCGTTCCTCCATGACTTTGGAATCACCAAAAAATACGCCATATTTGCAGACATACAGATAGGAATGAACCCCGTGGAAATGGTCACTGGAGGCTCGCCGAGGTTGGATATGATCCATGCGTCGGTGGAGATGGTGAGAATAGACCTAAAAACAGGAATGGTGACGAGGCATCCGCTATCCACACGGAATCTGGACTTTGCGGTGATAAACCCAGGATATGTGGGGAAAAAGAACAAATACGTGTACGCAGCAGTGGGTAATCCGATGCCCAAGATATCAGGAGTGGTGAAGCTGGACGTGGAGCCAGATAATCCAGAGGCGGAGGAGGATGATGGGTACATAGTGTCGTATGTGCACGATGAGAAGAGTGGAGAGTCAAAGTTCTTGGTGATGGATGCCAAGACTCCTAATCTGGATATTGTGGCTGCCGTGAGGCTGCCTCGCCGGGTGCCTTACGGTTTCCATGGACTACTATATAGTAAAAAAGACGCTCTACTTTTTCGACATCGTTGA 2748 50.4 MLVFKPASLSKSSHTHLLHLSHPLGRVEGKEMNPLFCPFLSSTLPHPKPLVSPSLTTTRPSSSPYPPFLHISAIRNVEDKLHSTFYATPTTSQFPEIPTTVITAKKRPVPSLLVTIFNGLDDFINNFIGPPLPPSIDPKHVLSGNFAPVDELPPTECEVIEGSLPPCLDGAYIRNGPNPQFYPRGPHHLFDGDGMLHSIRISHGRPIFCSRYVKTYKYIIEKRAGSPFDPVNGVGLANTSVAFFCGHLYALAESDLPYAVRLTPDGDIKTLGRYDFDGKLSMSMTAHPKIDPSTGEAFAFRYSPVRPFLTYFRFDAQGKKQPDVPIFSLSCPSFFHDFAITNRYAIFPDIQMWMNPVKMIIRGGSPVGTDPTKVPRKVRIDLKTGTVTRHRLSQWNLEFAVINPGYLGKKNRYVYSAVGDPLPKISGIVKLDVSRSDRRQEFSARRVSSHRPGSSQVKFASLKRIQPNKMDAFSSSFLSSTFTFPSLTTRPPIAPSSLPQIPSLNISAVRIEEKQPQSLTAETSSQSSKTQVHKPPPPPPRRAALPTRNIPKKGAAEPSLPVTIFNALDDVINNFIDPPLRSSVDPRYVLSQNFAPVEELPPTECEVTDGSLPPWLDGAYIRNGPNPQFLPRGPYHLFDGDGMLHSIRISQGRAILCSRYVKTYKYTIERRAGSPILPNFNPTLGRHDFDGKLVMSMTAHPKVDPETGEAFAFRYGPVPPFLTYFRFDAQGRKQPDVPIFSLTSPSFLHDFGITKKYAIFADIQIGMNPVEMVTGGSPRLDMIHASVEMVRIDLKTGMVTRHPLSTRNLDFAVINPGYVGKKNKYVYAAVGNPMPKISGVVKLDVEPDNPEAEEDDGYIVSYVHDEKSGESKFLVMDAKTPNLDIVAAVRLPRRVPYGFHGLLYSKKDALLFRHR* 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18560292 18594852 - Vvi2g972 Vvi2g972 783671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g972 915 MobiDBLite consensus disorder prediction 514 531 - -
Vvi2g972 915 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 4, CHLOROPLASTIC-RELATED 779 846 - -
Vvi2g972 915 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 4, CHLOROPLASTIC-RELATED 683 778 - -
Vvi2g972 915 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 4, CHLOROPLASTIC-RELATED 502 680 - -
Vvi2g972 915 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 4, CHLOROPLASTIC-RELATED 847 908 - -
Vvi2g972 915 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 4, CHLOROPLASTIC-RELATED 91 376 - -
Vvi2g972 915 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 4, CHLOROPLASTIC-RELATED 377 451 - -
Vvi2g972 915 Pfam Retinal pigment epithelial membrane protein 375 441 IPR004294 GO:0016702
Vvi2g972 915 Pfam Retinal pigment epithelial membrane protein 683 776 IPR004294 GO:0016702
Vvi2g972 915 Pfam Retinal pigment epithelial membrane protein 148 373 IPR004294 GO:0016702
Vvi2g972 915 Pfam Retinal pigment epithelial membrane protein 596 679 IPR004294 GO:0016702
Vvi2g972 915 Pfam Retinal pigment epithelial membrane protein 786 901 IPR004294 GO:0016702
Vvi2g972 915 PANTHER BETA-CAROTENE DIOXYGENASE 847 908 IPR004294 GO:0016702
Vvi2g972 915 PANTHER BETA-CAROTENE DIOXYGENASE 779 846 IPR004294 GO:0016702
Vvi2g972 915 PANTHER BETA-CAROTENE DIOXYGENASE 502 680 IPR004294 GO:0016702
Vvi2g972 915 PANTHER BETA-CAROTENE DIOXYGENASE 377 451 IPR004294 GO:0016702
Vvi2g972 915 PANTHER BETA-CAROTENE DIOXYGENASE 683 778 IPR004294 GO:0016702
Vvi2g972 915 PANTHER BETA-CAROTENE DIOXYGENASE 91 376 IPR004294 GO:0016702
Vvi2g972 915 MobiDBLite consensus disorder prediction 514 556 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g972 K09840 NCED; 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51] - vvi:100252859 692.575
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g972 . . . . . . . . . Cmo16g00546 . . . . . Cpe14g00423 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00501 . . Cpe01g00547 . . . . . . . . . . . . . . . . Csa04g00718 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0071783 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1