Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g975 ATGGTAGTGGCTTGTAGTGGTTACATGTCTCTCGAGTATGCAATGCAAGGACAATTCTCTAACAAGTCTGATTTGTATAGTTTTGGTGTCTTGATTTTAGAGATTATAAGTGCTAAAAAGAATAGTAGTTTCTATCAATCAGACCATGCAGAAGACCTTCTAAGCCATACTTGGAGACTTTGGAAGAATGGCACACCCATGGACCCAACAATAGGGGACTCTTATACGAGAAATGAAGTCATTAAATGCATCCATATAAGTTTATTATGTGTTCAAGAGGTTCCATATGACAGACCGTCCATGGCATTCATAGTCCTCATGCTCAATAGTTACTCTAGCATTAGAATCAGATCAATCTGCAACCAAGTCTATTGGTGTTGTGCCAACTGGATACAGGTCTTTCTAGCTTCACTAGAGTCAGACAGACTTTTTCCCTGCACAAAAGGATTGATTCTTCATTGCAAATTGGAGGAAGAAATTGTGGTCATGAAGGTTTCCTTCAGTAGAAACTTGTTGTTCTTGTGCGCTCTTGGGCTGGCCATCAGCTGCCTTGCCATTCAAGCAGCACCTGACTACATACATCACGTCTGCTCCAACACAACTACTATCCAACCTAACAGCACCTACCAGACCAATCTCAATTCCCTTCTCTCTTCCCTTTCCTCTAATGCTACCCGTGCCAACGGATTCTACAATGCCACTGCCGGCCAGAGCCCCGATGTTGCCTACGGCCTCTTCCTCTGCCGAGGCGATGTTGCCATTGACGATTGTCGAGATTGTGTGGCGAATGCCAGTGCAGAGATACTACAGCAGTGTTCAGGGGTAAAAAAGGCCATTATTTGGTATGATCAGTGTATGTTACATTACTCAAACAGGTCCATCTTCTCTAGAGTGGAAGAAAATCCCATGCTGCAACTTTACAATCTGCAGAATGTCACAGATCCAGGTCCATTCAATCAGTTAGTGGTGGATACGATGAATGCCACAGCGACTCTAGCTGCGAATGATGAATCAGGCAAGAAGTTTGCGACCAAAGAAGAAAATTTCACGGGATCTCAAACGCTGTACAGTCTAGTTCAATGCACTCCGGATTTATCGATTGCCGATTGCAGTAAATGTTTAGAGGGAGCCATTGGAGCTCTTTCGCTTTGCTGCAGTGGAAAACAAGGAGCAAGGACTTTGACTCCAAGCTGCAATGCTAGGTATGAACTGTACCCGTTCTACCAGCTTGAAGCTGGACCATTGGCGCCGGCACTGGCACCAGCACCAACTTCGGCGACAGTGCTGCTTCCTCCGCCTCCTGCTCCGTCTTCTAAATCAAGCGCTACAGGAAAAGCTAAAATTTCATCCCAAGTAATCATCGACATTGTTTTTCCGACCATTGTTGCTTACTTGGCTAATGGATGCAGGTTGTCTAAACTAGTTGATCTCAAATTCTGTTATAATATAAAAGACTGGACTCACATCTCTAAGGTTACTTGTGCTGGTAATTGA 1494 44.24 MVVACSGYMSLEYAMQGQFSNKSDLYSFGVLILEIISAKKNSSFYQSDHAEDLLSHTWRLWKNGTPMDPTIGDSYTRNEVIKCIHISLLCVQEVPYDRPSMAFIVLMLNSYSSIRIRSICNQVYWCCANWIQVFLASLESDRLFPCTKGLILHCKLEEEIVVMKVSFSRNLLFLCALGLAISCLAIQAAPDYIHHVCSNTTTIQPNSTYQTNLNSLLSSLSSNATRANGFYNATAGQSPDVAYGLFLCRGDVAIDDCRDCVANASAEILQQCSGVKKAIIWYDQCMLHYSNRSIFSRVEENPMLQLYNLQNVTDPGPFNQLVVDTMNATATLAANDESGKKFATKEENFTGSQTLYSLVQCTPDLSIADCSKCLEGAIGALSLCCSGKQGARTLTPSCNARYELYPFYQLEAGPLAPALAPAPTSATVLLPPPPAPSSKSSATGKAKISSQVIIDIVFPTIVAYLANGCRLSKLVDLKFCYNIKDWTHISKVTCAGN* 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18746618 18751691 + Vvi2g975 Vvi2g975 783674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g975 497 ProSiteProfiles Gnk2-homologous domain profile. 300 407 IPR002902 -
Vvi2g975 497 ProSiteProfiles Gnk2-homologous domain profile. 191 294 IPR002902 -
Vvi2g975 497 Pfam Protein tyrosine and serine/threonine kinase 7 105 IPR001245 GO:0004672|GO:0006468
Vvi2g975 497 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 113 - -
Vvi2g975 497 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 184 474 - -
Vvi2g975 497 SUPERFAMILY Protein kinase-like (PK-like) 3 113 IPR011009 -
Vvi2g975 497 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 5 184 474 - -
Vvi2g975 497 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 5 3 113 - -
Vvi2g975 497 Gene3D Transferase(Phosphotransferase) domain 1 1 122 - -
Vvi2g975 497 Pfam Salt stress response/antifungal 197 291 IPR002902 -
Vvi2g975 497 Pfam Salt stress response/antifungal 310 405 IPR002902 -
Vvi2g975 497 Gene3D - 189 293 IPR038408 -
Vvi2g975 497 Gene3D - 300 407 IPR038408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g975 - - - vvi:104877547 522.316
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g975 Blo02g01234 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000015 3 19 7 13 7 16 3 13 12 17 12 14 9 15 15 13 16 4 8 10 15 7 11 9 5 24 13 11 18 8 347
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76553 PF07714 PK_Tyr_Ser-Thr 7.80E-07 CL0016 Vvi PK