Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g976 ATGAGACAGTCAGACAGCGGTAATATCACAGAGCCAGACCAGTTTAATCAGGTGCTGGGAGACACCTTAGACTCCATAAGGACTCAAGCTGTGAATGATCAATCTGGCAAGAAGTTTGCCACTAAAGAAGAAAATTTCACAGGATTTCAAAGGGTGTACAGCCTAGTGCAGTGCACACCTGATTTATCTCCAGACCAATGCGATCGGTGTCTCATAGGAACCATTGCAATCCTCCCTGATTGCTGCGGTGGCAAACAGGGGGCAAGGGTCCTGTTTCCAAGCTGCAACGTTCGGTATGAGTTGTACCCATTCTACCAGAGTGTGGCCGCACCACCATCTCCTCCGCCGGCTCGACCTTCAGAACCAAGCACTGAAGGAAAAGGTGGAATATCTTCAAAAACAATTGTCATCATAGTTGTTCCAACGTTTGTCTCTGTGGTGATCTTCTCTATTCTATGCTACTGTTTCATACGTAGGTGTGCTAAGAAGAGATACGATACTTTAGAAGCGGAAAATGTTGAGTTCAATATCACCACCGAGCAGTCATTGCAATTTGATTTGGCTACAATTCAAGCTGCTACAAATAACTTCTCTGACCATAACAAGATTGGTGAGGGGGGATTTGGTGCCGTATACAAGGGTACACTTTCTAGTGGACAAGAAATTGCTATAAAGAGGCTATCTAAAAGCTCTGGGCAAGGTGCAGTAGAATTCAAAAATGAGGTTGTATTGGTAGCCAAGCTTCAACACAGAAATCTAGTGAGGTTATTGGGATTTTGCTTGGAAGGGGAAGAGAAGATACTTGTCTATGAATATGTGCCCAACAAAAGCCTTGACTACTTCCTGTTTGATCCTGATAAACGAGGACAATTGGATTGGTCAAGACGGTACAAGATTATTGGAGGAATAGCCCGAGGGATTCTTTATCTTCATGAAGATTCCAGGCTCAGAGTTATACATCGTGATCTAAAAGCCAGCAATGTTTTGCTAGATGGTGATATGAACCCTAAAATTTCAGATTTTGGCATGGCAAGGATTTTTGGTGTAGATCAAACTCAAGGAAATACAAACAGAGTTGTTGGCACATATGGTTACATGTCTCCAGAGTATGCAATGCATGGACGCTTCTCTGTCAAGTCCGATGTCTATAGTTTTGGTGTCTTAGTTTTAGAGATTATAAGTGGCAAGAGGAGTAATTGTTTCCACGAATCAGACCAAGCAGAAGACCTTCTGAGCTATGCTTGGAAACTTTGGAGGAATGACACACCCTTGGAATTTATGGGCCCAACGACAAGGAATTCTTTCTCAAAAAATGAAGTCATTAGGTGCATCCATATGGGGTTATTATGTGTTCAAGAAGATCCGGATGACAGACCATCCATGGCATCGGTAGTTCTCATGCTCAGCAGTTACTCTGTTACTCTACCATTGCCTCAACAGCCAGCCTCCTTTAGTCGCACGGGAGCACTGTCAGACTTTCCAATAATGGCACTGGAATCGGACCAATCTGCAAGTAAGTCAATGACATGGTCTGTGAATGAAGCTTCAATCACTGATTTATATCCTAGATAG 1572 43.19 MRQSDSGNITEPDQFNQVLGDTLDSIRTQAVNDQSGKKFATKEENFTGFQRVYSLVQCTPDLSPDQCDRCLIGTIAILPDCCGGKQGARVLFPSCNVRYELYPFYQSVAAPPSPPPARPSEPSTEGKGGISSKTIVIIVVPTFVSVVIFSILCYCFIRRCAKKRYDTLEAENVEFNITTEQSLQFDLATIQAATNNFSDHNKIGEGGFGAVYKGTLSSGQEIAIKRLSKSSGQGAVEFKNEVVLVAKLQHRNLVRLLGFCLEGEEKILVYEYVPNKSLDYFLFDPDKRGQLDWSRRYKIIGGIARGILYLHEDSRLRVIHRDLKASNVLLDGDMNPKISDFGMARIFGVDQTQGNTNRVVGTYGYMSPEYAMHGRFSVKSDVYSFGVLVLEIISGKRSNCFHESDQAEDLLSYAWKLWRNDTPLEFMGPTTRNSFSKNEVIRCIHMGLLCVQEDPDDRPSMASVVLMLSSYSVTLPLPQQPASFSRTGALSDFPIMALESDQSASKSMTWSVNEASITDLYPR* 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18774892 18778611 + Vvi2g976 Vvi2g976 783675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g976 523 CDD STKc_IRAK 203 468 - -
Vvi2g976 523 SUPERFAMILY Protein kinase-like (PK-like) 183 495 IPR011009 -
Vvi2g976 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 318 330 IPR008271 GO:0004672|GO:0006468
Vvi2g976 523 Pfam Protein tyrosine and serine/threonine kinase 200 466 IPR001245 GO:0004672|GO:0006468
Vvi2g976 523 ProSiteProfiles Gnk2-homologous domain profile. 1 104 IPR002902 -
Vvi2g976 523 Gene3D - 1 104 IPR038408 -
Vvi2g976 523 Pfam Salt stress response/antifungal 7 102 IPR002902 -
Vvi2g976 523 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 522 - -
Vvi2g976 523 PANTHER PROTEIN, PUTATIVE ISOFORM 1-RELATED 8 522 - -
Vvi2g976 523 Gene3D Transferase(Phosphotransferase) domain 1 273 475 - -
Vvi2g976 523 ProSitePatterns Protein kinases ATP-binding region signature. 203 225 IPR017441 GO:0005524
Vvi2g976 523 Gene3D Phosphorylase Kinase; domain 1 158 272 - -
Vvi2g976 523 ProSiteProfiles Protein kinase domain profile. 197 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g976 523 SMART serkin_6 197 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76554 PF07714 PK_Tyr_Ser-Thr 1.00E-47 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g976 - - vvi:100257888 1012.29