Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1 CCAAAACTGCTTGGATACGGGTTGAATCAGAGAACACTCCCGGGTACTGCTTGGTACAGGTCTCTCGTTTTCTTGCTTTGCAGTTTCCCCTCCTGCAACCAAGCGAATCTCTTGGAGGACGACGCCGCCGCCGCCGCTATGAAACGATCAATTGAGGAAGACATCAGCACCACCATCGTCTCCGCCGCCACCAACATGAAGAAGCCCGTCTTCTTGACCAAAGCCCAGCGCGAACAGTTGGCCCTTCAACGTCGCCACGAAGAAATCGCCGAACAGAAGCGCCGTGCTGAACAACAGCTACTCCAAGCCCGCTCCTCCTCCGGCAACCACTCCTCCCACGCTGCCTCCACCAACAAACCCTCAGATCCCTCTCTGGACAGCCGCCATCACCGCTCTTCCAGAGACCGAGATCGCGATCGCGATCGCGATCGCGATCGCGACCGGGACCGTGATTCAGAGCGGAGGAACCGCGATCGGGAACGCGAGGAAGAGGCCAAGGTTCGGGAGCGAGCTCGCTCAGAGAAACTAGCTGACCGGGAGCGAGAGAAAGAGCTTGAATCCATCAAAGAACAGTACCTCGGATCCAAGAAACCCAAGAAAAGGGTTATTAAACCCAGCGAGAAGTTCCGATTTTCCTTCGATTGGGAGAACACTGAGGACACCTCCCGCGACATGAATTCACTCTACCAAAACCCTCACGAGGCTCAGCTCTTGTTCGGAAGAGGATTTCGTGCTGGCATGGATCGTCCCCAGAGGCAGAAGGAACAAGCCGCCGAATTGTATGATACTTTTGATATGAGAGTGGATCGCCACTGGACCGAAAAGAAGCTAGAGGAAATGACTGAGAGGGACTGGAGAATTTTCAGAGAGGATTTCAATATATCTTACAAGGGCTCTAAGATTCCTCGCCCTATGAGGAGTTGGGTAGAGAGCAAATTGAGTACTGAGCTGCTCAAGGCCGTGGAGAGGGCTGGCTATAAGACGCCTTCCCCTATTCAGATGGCAGCCATTCCTCTCGGACTGCAACAGCGCGATGTGATTGGGATTGCTGAGACTGGTTCTGGTAAGACTGCTGCATTTGTGCTTCCCATGCTGACTTACATTTCTAGACTCCCTCCCATGAGCGAGGAGAATGAAGCTGAAGGGCCTTATGCTGTTGTAATGGCCCCTACCCGTGAACTTGCGCAGCAGATTGAGGATGAGACTGTGAAGTTTGCCCATTATTTGGGTATCAAAGTGGTTTCTATTGTCGGTGGTCAGTCGATCGAAGAGCAAGGGTTTAGGATCAGGCAAGGGTGTGAGGTTGTAATTGCGACACCTGGGCGGCTAATTGATTGCCTGGAGAGGCGTTATGCTGTTTTGAACCAATGCAATTATGTTGTTCTGGACGAGGCTGATCGCATGATTGACATGGGTTTTGAGCCACAAGTGGTGGGTGTTTTGGATGCTATGCCTTCAAGCAATTTGAAGCCAGAGAATGAAGATGAAGAGCTTGATGAGAAAAAAATATACCGGACCACTTATATGTTCAGCGCTACAATGCCTCCAGCTGTGGAACGGCTTGCAAGGAAGTACTTAAGAAATCCTGTTGTAGTCACAATTGGCACTGCTGGAAAGGCCACTGACCTGATCACTCAGCATGTTATTATGATGAAGGAATCAGAGAAAATGTTTAAGTTGCAGAAGCTGCTGGATGAACTCGGAGATAAGACTGCAATTGTGTTTATCAACACTAAAAAGTCTGCAGATAATCTTGCCAAGGGTTTGGATAAGGCAGGCTACCGAGTGACAACTTTGCATGGTGGAAAGTCACAAGAGCAGAGGGAAATTAGCCTTGAAGGTTTTAGGACCAAGAGATATAATGTTTTGGTTGCAACAGATGTGGCTGGGCGTGGGATTGATATCCCTGATGTCGCACATGTTATAAACTATGACATGCCTGGGAATATTGAGATGTACACACATCGTATTGGACGGACAGGCCGTGCAGGGAAGACAGGGGTGGCCACAACATTCTTGACTCTGCATGATTCTGATGTCTTCTATGACCTCAAGCAGATGCTTATTCAGAATAACAGTCCTGTGCCTCCAGAACTAGCAAGACATGAGGCTTCAAAATTCAAGCCAGGAGCAATTCCTGACAGACCACCTAGACGCAATGACACAGAATCCAGAGTGCTGAAAGTGGTGGATGAAACTATTACTTATGTCTGTGGTATAGCTGCTGCCATGCCATTGTTGCCATCTGATGCAAGGACCTTCATAATGATATTGATTGAGAATTTCCTATTATCCTTTATTTTCTTTTTGTTCATTTATGCTGAAGTTGATTTAAAGGCATTAATTTTTGTTTTTCAGTGTGCTCATAGGAGTTATTATTTATCTGACATCTAA 2394 48.33 PKLLGYGLNQRTLPGTAWYRSLVFLLCSFPSCNQANLLEDDAAAAAMKRSIEEDISTTIVSAATNMKKPVFLTKAQREQLALQRRHEEIAEQKRRAEQQLLQARSSSGNHSSHAASTNKPSDPSLDSRHHRSSRDRDRDRDRDRDRDRDRDSERRNRDREREEEAKVRERARSEKLADREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRPQRQKEQAAELYDTFDMRVDRHWTEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWVESKLSTELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMMKESEKMFKLQKLLDELGDKTAIVFINTKKSADNLAKGLDKAGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDSDVFYDLKQMLIQNNSPVPPELARHEASKFKPGAIPDRPPRRNDTESRVLKVVDETITYVCGIAAAMPLLPSDARTFIMILIENFLLSFIFFLFIYAEVDLKALIFVFQCAHRSYYLSDI* 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2917 5568 + Vvi3g1 Vvi3g1 783676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1 797 MobiDBLite consensus disorder prediction 123 185 - -
Vvi3g1 797 MobiDBLite consensus disorder prediction 91 185 - -
Vvi3g1 797 Coils Coil 150 170 - -
Vvi3g1 797 MobiDBLite consensus disorder prediction 99 122 - -
Vvi3g1 797 Pfam DEAD/DEAH box helicase 331 521 IPR011545 GO:0003676|GO:0005524
Vvi3g1 797 CDD SF2_C_DEAD 544 673 - -
Vvi3g1 797 CDD DEADc_DDX23 317 533 - -
Vvi3g1 797 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 461 469 IPR000629 -
Vvi3g1 797 SMART helicmild6 583 664 IPR001650 -
Vvi3g1 797 Gene3D - 537 720 IPR027417 -
Vvi3g1 797 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 263 720 - -
Vvi3g1 797 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 306 334 IPR014014 GO:0003724
Vvi3g1 797 Pfam Helicase conserved C-terminal domain 557 664 IPR001650 -
Vvi3g1 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 685 IPR027417 -
Vvi3g1 797 Gene3D - 267 536 IPR027417 -
Vvi3g1 797 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 337 532 IPR014001 -
Vvi3g1 797 PANTHER - 263 720 - -
Vvi3g1 797 Coils Coil 72 106 - -
Vvi3g1 797 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 559 703 IPR001650 -
Vvi3g1 797 SMART ultradead3 325 547 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1 K12858 DDX23, PRP28; ATP-dependent RNA helicase DDX23/PRP28 [EC:3.6.4.13] - vvi:100241918 1212.21
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1 . . . . Bpe07g00526 . . . . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 . Cpe04g00116 . . . . . . . . Cla02g00501 Cam02g0511 Cec02g0511 Cco02g0519 Clacu02g0513 Cmu02g0509 Cre02g0842 . . . . . . . Cme01g01368 . . . . . . . . Sed01g0278 Cmo02g00382 Cmo20g00835 . . . . . . Bhi10g01967 Tan05g1260 Cmetu11g0821 . . . . . . . . . . . . . Chy01g00763 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004414 1 6 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 2 38