Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g100 ATGATCACTTGCATACATGGATTGCAAAATCTGATTTTATCGGCGATATTTCACCGATATATCGGATATCGGGCCGCCTCGAAACGAAATTCAACACCGATTATCAATCGAAAGGAATATCGGGCTGTAATCTCCTTTGTCGTAAACAGGATTGGTGACCAACTCATTGAAGAAGCAGTTTTCTTGAAGGATGTGCGCCCACGAATTGAGAGGCTGCATAGAGATCTGAGGGCGATCAACTGCTTCTTGGAAGCAGCCGATGCAAAGCAAGAGGAAGACCCAAGGGTGCGTAACTGGGTTTCAGACATCCGAGATGTTGCTTATGATGCTGAAGACGTGGTCGACATGTTCATCCTCAAGGCTGAGGCCCTGAGGAGAAAAATCTTTGTCAAGCGCGTTTTCCAAAAGCCGAGGTGTCTGCATAACCTTGGCAAGAAAATCGATGACGTCCAAACTAACCTCCAAGACATCTCAAAGAGGCGGGAAATCCTGGGAATAAAAAATATTGGTGAAGGAACAAGCACTTCAACTCAGATGCTGCAGAATCTAAGACGGACCACTCCTCCAAGGAAGATAGAGAAATTGCAGGAGAACGAGTTGGGGGATTTCCTTCATAAACGCCTGAAGGAGAAAAGTTGTCCTCCAGAGTTGAAGGAATTCGGGGAAAGGATGGTGAAAAAATGTGCTGGTTTACCATTGGCCATTGTTGTATTGGGAGGCTTGTTATCATCCAAAAAGCAATTGCCTACTGAGTGGGAAAAGGTGCTCAAGAACCTACAGGCGCACTTCTCCAGTGACAAAGGAGTAGATGCAGTATTGAGTTTAAGCTACATTGACTTGCCCCACAACTTGAGATCATGCTTTCTTTATCTAGGCCTCTTCCCAGAAGATCAGATAATCCCCACAAGAAAATTGCTCCTCCTATGGATGGCAGAGGGTTTTATCCCACAGAAAGATGAACGAAGAATGGAGGACACCGCTGAGGATTATTTGAATGAGTTAATCAGTAGAAACTTGGTTCAAGTAGTAACAGTGAGTGTTAATGAGAGAGCAACAAAATGCCAAATTCATGATCTAGTACGGGATTTATGCATCAAAAGGGCGAAAGAGCAGACCCTTTTTGAGATAAAAAAGAGCGTGAGTTCATCTTTTCCTTCAACCAAATCCCATCGACAGGGTATTTATTTTGACTTGGAGAGGTATGCTTCCACAAAACATTCAACTCCATACATTTGCTCTCTCTTCTTCTTCACATTAAAAGGTCATTGGTGCCGTCTACAACAATTAGATTTTATTTGCAAATATTTCAAACTGCTTAGGGTGCTAGACTTGGAAGGTTTATTCGTTGAAATACCGAGAGCATTTGGGAAACTGATTCATTTGAGGTATTTGAGAAACATGGAAAATCTTCAACACCTTTTCATCTCGTATGAAAGACAAGATGGCAAGCCATTACGAATTGACAATCTAAGAAATCTCCAAACTCTATCCGGCATATGGTTTAGTGATTGGCAACAAAATGATACGAGTAAGTTACCTAACCTTCATAAATTGAAAATCAACGTGGGATTTGACTTGGAAGTGTCCCAGTTCTCAAACTCTATTGCCAAGCATGTGAATCTTCGCTCATTTCACTACAGTTTTTTGGATTCAGATCCCCGTAGCATTCCATCTTTTGTCATGAACTCTTGGCTCCATCTATCTAAGCTGCACATGAAGGGAAACATAAAGCAATTGCCTAGAGCACATGAATTCTCACCAAATCTAACACAGTTGACCTTAGATAGGATTATACTGGACTATGACCCTATGGCGATTTTGGAGAAGCTGCCAAAATTGTTGATTTTAAGATTGAGGATGATCTCAAAACTCAGACAAGGAGTACTGCAAGTATCTGCAAATGGCTTTCCTCAACTCAAAATCCTTCAACTTGCTAAGTTAAAGGTATTTGGGGAGAAGATGGTGAAGAAATGTGCTGGTTTGCCATTGGCCATTGTTGTATTGGGAGGCTTGTTATCATCCAAAAAGCAGTTGCCGACTGTGTGGGAACAGGTGCTCAACAAGCTCCAGGTGCCCTTCTCTGAAGGCAATGGTGTAGATGCAATATTGAGCTTAAGTTTCATCGATTTGCCCCACAACTTGAAATCATGCTTTCTTTATCTAGGCCTCTTTCCAGAAGATTGGGTCATCCCCAAGAGAGAATTACTCCTTTTATGGATTACAGAGGGTTTTATTCCACAACAAGATGAACAAAGAATGGAGGACACTGCTGAGGATTATTTGAATGAGTTAATCAATAGAAATTTGATTCAAGTAGTAGCAGTGAGTATTAATGAGAGAAGTAAAAAATGTCGGGTTCATGATCTAGTAAGGGATTTATGCATAAAGAAGGCAAAAAAGCAAAAGCTGTTTGAGATTCAAAATAACATAGTTCATGTTCCCTCATCTTGTTCATCTCACCCTTCAACCAAATGTCGTCGACAAGGTATCCATTTTGGCTCGGGGGGTATTAATTCGTTCTTTTCAAAGCTTCCAACCTCTTTAGGTAATTTAAGGAGGTGGCAAACTTTGGATATTGGTATTGTTATATTGGAAAAGCCAACTGTGATACAAAAAATGAAAAATCTACGACATCTCTTCCTCTTCTATCATAGTCAAGATGGCAAGCCATTGCTAATTGACACTTCTCCAAACTCTGTCTAA 2703 40.99 MITCIHGLQNLILSAIFHRYIGYRAASKRNSTPIINRKEYRAVISFVVNRIGDQLIEEAVFLKDVRPRIERLHRDLRAINCFLEAADAKQEEDPRVRNWVSDIRDVAYDAEDVVDMFILKAEALRRKIFVKRVFQKPRCLHNLGKKIDDVQTNLQDISKRREILGIKNIGEGTSTSTQMLQNLRRTTPPRKIEKLQENELGDFLHKRLKEKSCPPELKEFGERMVKKCAGLPLAIVVLGGLLSSKKQLPTEWEKVLKNLQAHFSSDKGVDAVLSLSYIDLPHNLRSCFLYLGLFPEDQIIPTRKLLLLWMAEGFIPQKDERRMEDTAEDYLNELISRNLVQVVTVSVNERATKCQIHDLVRDLCIKRAKEQTLFEIKKSVSSSFPSTKSHRQGIYFDLERYASTKHSTPYICSLFFFTLKGHWCRLQQLDFICKYFKLLRVLDLEGLFVEIPRAFGKLIHLRYLRNMENLQHLFISYERQDGKPLRIDNLRNLQTLSGIWFSDWQQNDTSKLPNLHKLKINVGFDLEVSQFSNSIAKHVNLRSFHYSFLDSDPRSIPSFVMNSWLHLSKLHMKGNIKQLPRAHEFSPNLTQLTLDRIILDYDPMAILEKLPKLLILRLRMISKLRQGVLQVSANGFPQLKILQLAKLKVFGEKMVKKCAGLPLAIVVLGGLLSSKKQLPTVWEQVLNKLQVPFSEGNGVDAILSLSFIDLPHNLKSCFLYLGLFPEDWVIPKRELLLLWITEGFIPQQDEQRMEDTAEDYLNELINRNLIQVVAVSINERSKKCRVHDLVRDLCIKKAKKQKLFEIQNNIVHVPSSCSSHPSTKCRRQGIHFGSGGINSFFSKLPTSLGNLRRWQTLDIGIVILEKPTVIQKMKNLRHLFLFYHSQDGKPLLIDTSPNSV* 901
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1049126 1061006 - Vvi3g100 Vvi3g100 783775

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g100 900 Pfam Rx N-terminal domain 43 125 IPR041118 -
Vvi3g100 900 Gene3D - 194 275 IPR042197 -
Vvi3g100 900 Gene3D - 634 705 IPR042197 -
Vvi3g100 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 291 IPR027417 -
Vvi3g100 900 Pfam NB-ARC domain 189 264 IPR002182 GO:0043531
Vvi3g100 900 Pfam NB-ARC domain 646 690 IPR002182 GO:0043531
Vvi3g100 900 CDD RX-CC_like 42 159 IPR038005 -
Vvi3g100 900 SUPERFAMILY L domain-like 357 653 - -
Vvi3g100 900 PANTHER - 191 645 - -
Vvi3g100 900 PANTHER - 645 827 - -
Vvi3g100 900 Gene3D - 276 368 IPR036388 -
Vvi3g100 900 Gene3D - 706 798 IPR036388 -
Vvi3g100 900 PANTHER DISEASE RESISTANCE PROTEIN RP 645 827 IPR044974 GO:0006952
Vvi3g100 900 PANTHER DISEASE RESISTANCE PROTEIN RP 191 645 IPR044974 GO:0006952
Vvi3g100 900 Gene3D - 43 163 - -
Vvi3g100 900 Coils Coil 140 160 - -
Vvi3g100 900 Gene3D Ribonuclease Inhibitor 418 632 IPR032675 -
Vvi3g100 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 721 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g100 - - - vri:117911194 731.48
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g100 Vvi7g1287 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014648 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 13 16