Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1002 ATGCTAAATTACAGTAGGAACCGAGCTCATTCAAAACCAAACCGATCTTTCTCACTTGAAGCCATGGATCTTGCTGACTCAAGACGTAAGAGCAATGTTACGGGAAAAGTTCTTATGGCTATTTCCCTCATTACTCTCTGTATTATCATTCTCAAGCGGTCACCAAACTTTAGCAGCCCCAGCCCGTTCTCCCACCGTCAGCCCGGCGTAACACACGTCTTAGTAACTGGAGGTGCTGGCTACATAGGTTCTCATGCTGCCCTTCGGCTTTTGAAGGATTCACACCGTGTAACTATAGTGGACAATCTTTCTCGGGGAAACCTAGGTGCTGTAAAGGTTCTCCAACAGCTATTTCCGGACCCTGCACAACTACAGTTCATTTATGCTGACCTTGGGGATGCAAAAGCTGTTAACAAAATATTTTCTGAAAACGAGTTTGATGCTGTGATGCATTTTGCAGCTGTTGCTTATGTTGGTGAGAGTACAATGGATCCTCTTAGGTACTATCATAATATTACTTCCAATACATTGATGGTATTAAAGGCAATGGCAGCACATGGTGTAAAGACATTGATCTATTCCAGTACTTGTGCAACATACGGCGAGCCTAAAAAGATGCCGATTACTGAAGGAACCCCTCAAGTCCCAATCAACCCGTATGGAAAAGCTAAGAAGATGGCAGAAGATATGATCATCGACTTCTCAAAGAATTCCGACATGGCTGTTATGGTCTTAAGGTATTTCAATGTGATTGGGTCGGATCCAGAGGGCAGACTAGGAGAAGCTCCACGGCCTGAACTGCGTGAGCATGGTCGTATATCTGGTGCTTGTTTTGATGCAGCTCTTGGGATTATTCCTGGGCTAAAGGTTAAAGGAACAGACTACAAAACAGCAGATGGCACTTGTGTCCGGGACTATATCGATGTCACTGACTTGGTTGATGCTCATGTAAAAGCTCTTGCCCATGCAAAACCTAAGAAAGTTGGCATCTACAATGTTGGAACAGGAAAAGGTAGATCAGTGAAGGAGTTCGTCGAAGCATGCAAGAAGGCAACAGGGGTGGACATAAAGGTCGAATACCTTGACCGGCGACCCGGTGACTATGCAGAAGTGTACAGTGATCCTTCCAAGATTCTCCGGGAGCTCAACTGGACAGCCCAATACACTAATCTCCAAGAGAGCTTGCAGACCGCGTGGAGGTGGCAAAAATCTCACAGAAATGGCTATGGTACCCGAATGTCTCTGCATTCTTGA 1254 45.45 MLNYSRNRAHSKPNRSFSLEAMDLADSRRKSNVTGKVLMAISLITLCIIILKRSPNFSSPSPFSHRQPGVTHVLVTGGAGYIGSHAALRLLKDSHRVTIVDNLSRGNLGAVKVLQQLFPDPAQLQFIYADLGDAKAVNKIFSENEFDAVMHFAAVAYVGESTMDPLRYYHNITSNTLMVLKAMAAHGVKTLIYSSTCATYGEPKKMPITEGTPQVPINPYGKAKKMAEDMIIDFSKNSDMAVMVLRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGIIPGLKVKGTDYKTADGTCVRDYIDVTDLVDAHVKALAHAKPKKVGIYNVGTGKGRSVKEFVEACKKATGVDIKVEYLDRRPGDYAEVYSDPSKILRELNWTAQYTNLQESLQTAWRWQKSHRNGYGTRMSLHS* 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16336054 16343696 + Vvi3g1002 Vvi3g1002 784677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1002 417 PANTHER UDP-ARABINOSE 4-EPIMERASE 2 ISOFORM X1-RELATED 45 404 - -
Vvi3g1002 417 CDD UDP_G4E_1_SDR_e 72 403 IPR005886 GO:0003978|GO:0006012
Vvi3g1002 417 Pfam GDP-mannose 4,6 dehydratase 74 389 IPR016040 -
Vvi3g1002 417 Gene3D - 73 334 - -
Vvi3g1002 417 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 72 409 IPR036291 -
Vvi3g1002 417 Gene3D - 252 387 - -
Vvi3g1002 417 PANTHER PINORESINOL REDUCTASE-RELATED 45 404 - -
Vvi3g1002 417 TIGRFAM galE: UDP-glucose 4-epimerase GalE 73 408 IPR005886 GO:0003978|GO:0006012
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1002 K12448 UXE, uxe; UDP-arabinose 4-epimerase [EC:5.1.3.5] - vvi:100250343 829.706
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1002 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo16g00460 . . . . Cpe14g00361 Cpe01g00592 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001238 1 3 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 1 2 10 4 2 74