Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1003 ATGGAGAGATCTCAGGGTTTGGATTTCAAGGACCTCCCCGAGGCTTCTTCCTCAGATGGTGCACTCTTTGATGCATCACAATATGAATTTTTTGGTCAACATGCTGTGGAGGAAGTGGAGTTGGGGGGTTTGGAGAATGAAGAAAATATTCCTGTATTTGGATCCGTTGACGATGAGTATCAGTTGTTTGAGAGAGAAGAGAGTGTAGGTTTAAGTTCTTTGTCTGACATCGATGATCTGGCAAGTACATTTTCAAAGTTGAACAGAGTTGTTACTGGACCAAGAAATCCAGGAGTTATTGGTGATAGGGGTTCTGGATCTTTTTCAAGAGAAAGTTCGTCTGCAGCTGATTGGGCACAAGACACAGATTTTCCGAACTGGTTGGATCAGCATATGTTTGATGCAGAATGTTCTCAGGAAGGCAAGAGGTGGTCATCACAGCCACATGCTTCTTCTGCTCATCTAGGTGAATCAAGGCCTTTGTACAGAACATCGTCATATCCTCAGCAGCCACAGCAGCCACATCACTTCTCGAGTGAACCAATTTTAGTGCCCAAATCATCTTTCACATCTTTCCCTCCGGGTGGCAGTTCTCAACAGGCTTCACCACGCCACCACCATTCACATCACCTGAATATTTCATCTCTTACTGTCGGACCTCAGTTGCACTTATCTGCGCCAAATCTATCTCCTTTATCTAACTCTAATATCCATTTGTCTGGCTTACCACATGGGTTGCATTACGGTGGAAATATACCTCAGTTCAACCCTCCTGGTCTATCTGTTAATAATAGGCCACTGAACCACTGGGTCAATCATGCTGGCTTAATTCATGGAGATCACCCTAGCCTCTTGAACAATATTCTGCAACAACAATTACCTCATCAAAATGGGATAATGCCCCAACAGTTAATGTCACAACAGCAGCTTCAACAGCAGAGGTTGCATCATTCAGTTCAACCATCCATGGCCCATTTTTCAGCACTGCGATCCCAACTACCCAAGTCAACACAAAGGAGTAAACAAAACATGCGCTTTTCTCACCAAGCCTCTGATTCTAGCAGCCAGAAAAGTGATAATGGTCTGGTGCAATTCAGGTCCAAGTATATGACAGCTGATGAGATAGAGAGTATTCTTAGAATGCAGCATGCTGCCACACATAGCAATGACCCCTACATAGATGATTATTACCACCAAGCACGTCTTGCTAAAAAATCTGCTGAATCAAGGTTGAAACACCATTTCTACCCGTCTCACCTTAAGGATCTTCCTACTCGAGGACGCAATAATACAGAACAGCATTCTCATCTCCCTGCTTCTTTTGATGAATTCTTTAGTCTTCTTACCAAGTATTGCCTGAGTAAATATGAGACTATCATACACCGGGAAATGCCTGTGGAGCTTCTACGTGCAAGTCTTCCTCACACTGATGAGCACCAGCGGAAGCTTTTACTAGATTTTGCTCAGCGATCCATGCCCATCACAGGATTCAATACCCGAGGGAGCAGTGGCCAGGTAACTTCTGAATCAGTGAGGGGTTAA 1542 44.16 MERSQGLDFKDLPEASSSDGALFDASQYEFFGQHAVEEVELGGLENEENIPVFGSVDDEYQLFEREESVGLSSLSDIDDLASTFSKLNRVVTGPRNPGVIGDRGSGSFSRESSSAADWAQDTDFPNWLDQHMFDAECSQEGKRWSSQPHASSAHLGESRPLYRTSSYPQQPQQPHHFSSEPILVPKSSFTSFPPGGSSQQASPRHHHSHHLNISSLTVGPQLHLSAPNLSPLSNSNIHLSGLPHGLHYGGNIPQFNPPGLSVNNRPLNHWVNHAGLIHGDHPSLLNNILQQQLPHQNGIMPQQLMSQQQLQQQRLHHSVQPSMAHFSALRSQLPKSTQRSKQNMRFSHQASDSSSQKSDNGLVQFRSKYMTADEIESILRMQHAATHSNDPYIDDYYHQARLAKKSAESRLKHHFYPSHLKDLPTRGRNNTEQHSHLPASFDEFFSLLTKYCLSKYETIIHREMPVELLRASLPHTDEHQRKLLLDFAQRSMPITGFNTRGSSGQVTSESVRG* 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16344078 16360673 - Vvi3g1003 Vvi3g1003 784678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1003 513 MobiDBLite consensus disorder prediction 315 361 - -
Vvi3g1003 513 MobiDBLite consensus disorder prediction 161 202 - -
Vvi3g1003 513 MobiDBLite consensus disorder prediction 161 210 - -
Vvi3g1003 513 MobiDBLite consensus disorder prediction 95 115 - -
Vvi3g1003 513 PANTHER LOW QUALITY PROTEIN: PROTEIN PAT1 HOMOLOG 1-LIKE 460 511 - -
Vvi3g1003 513 PANTHER LOW QUALITY PROTEIN: PROTEIN PAT1 HOMOLOG 1-LIKE 1 437 - -
Vvi3g1003 513 PANTHER LOW QUALITY PROTEIN: PROTEIN PAT1 HOMOLOG 1-LIKE 439 460 - -
Vvi3g1003 513 PANTHER TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1 460 511 IPR039900 GO:0000290
Vvi3g1003 513 PANTHER TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1 1 437 IPR039900 GO:0000290
Vvi3g1003 513 PANTHER TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1 439 460 IPR039900 GO:0000290
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1003 K12617 PATL1, PAT1; DNA topoisomerase 2-associated protein PAT1 - vvi:100255521 786.949
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1003 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0280 Cone9ag0316 . Cone15ag0954 . . . . . . . . . . . . . . . . . . . . Cpe01g00557 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001208 3 3 3 3 4 1 4 1 1 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 1 2 2 4 2 1 73