Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1004 ATGGAACCACAAGACCTCTCCGATAACCCCACCGCCGCCGTCTCCGGCGAGTCCACCCCCGAAAACCAATCTTCTCCGCCCGAGACCACCCTCGAAGTCCGCGTTTCGGACTCCCAGCTCGATGAAACCTCAGAGCCTCCGCCGAAGAAGCGCCGCCGGCGAAAGAAGCAGTTCCCAGAGATGATATCTTCCGCCGCGGCCAAGATCATGGACGATATCATCGGAATGCAGATCAACGACTCCCCGGCGCTGTCCAAGACCCACCGCCGCCGCCGACGCATCGCCGATCTCGCCAAGGAGGTCGACGTTGAGGCCCTGGTCGCCATCTCTGTCGGGTTTCCGGTGGACTCTCTTACAGAAGAGGAAATCGAAGCAAATGTGGTGACGGCGATCGGCGGAGCCGAGCAGGCCAACTACATCGTCGTCCGAAACCACATCCTCGCGCGGTGGCGCTGGAGCGTTTCCACATGGCTCACCCGCGACCACGCAATGGAATCGATTCGATCGGAGCATCGAAATTCGGTAAATTCTGCATACTCCTTTTTGCTTGAGCATGGTTACATCAATTTTGGCCTCGCGCCTGCCATTAGAGAGGTGCAACTGAAGCCAAATGATTCGTTGAAAGCTAGTGTAATAATCGTCGGTGCGGGACTAGCTGGATTAGCTGCCGCCCGGCAATTGATCTTTCTAGGGTTTAAGGTTTTGATATTGGAAGGGAGGAGCAGGCCCGGAGGGCGCGTGAGAACAAGAAAGATGAAGAGAATGGATGGTTGCGGAGTGATTGCAGCTGCTGATCTCGGTGGGAGTGTCCTCACTGGGATCAATGGGAACCCGTTAGGGGTTTTGGCGAGGCAATTAGGGTTTCCTCTGCACAAGGTGAGGGATATATGCCCACTTTATTTGCCTGATGGGAGAATGGTGAATTCGGAGATTGATTCGCGGGTGGAGACTTCATTTAACAGGTTGTTGGATAGGGTTTGTAAGCTAAGGCAGGCAATGATGGAGGAGGTTAAGTCCGCGGATGTTTCACTTGGGACTGCGCTTGAGGCCTTTAGGCGTGTTTACAAGGTTGCAGAGGACCCCCAAGAGCGGATGCTGTTGAATTGGCATCTCGCGAATTTAGAGTATGCGAATGCATCGCTGATGTCTGATTTGTCTATGGCATATTGGGATCAGGATGATCCATATGAAATGGGGGGTGACCACTGTTTCATTCCTGGAGGAAATGAGAGGTTTGAGTTTCGGGGGGACATGGTGCTTTGTACAGTGCCATTGGGTGTGCTCAAGAAAGGAACGATAGATTTTCTGCCTCAACTTCCCCAAAGAAAGAGAGATGCAATTCAAAGAATTGGGTTTGGATTACTAAACAAGGTTGCTATGTTGTTTCCATATGATTTTTGGGGTGGAGAAATTGACACGTTTGGGCATTTGACAGAAGAGTCAACGATGAGGGGCGAGTTCTTTCTGTTCTACAGCTATTCTTCTGTATCAGGAGGCCCGCTTCTTGTGGCTCTTGTTGCAGGAGAGGCAGCAATTAATTTCGAAATGATGTCCCCCGTGGAAGCTGTGAGAAGGGTTTTGGACATACTGAAGGGTATTTTCAATCCAAAAGGGATAGCTGTTCCTGATCCAATTCAGGTGGTCTGCACCCGGTGGGGAAAAGATCGCTTCACATATGGTTCTTACTCTTATGTTGCAATTGGTTCATCAGGGGATGATTATGATATCCTGGCAGAGAGTGTAGGAGACGGAAGGGTTTTCTTTGCAGGAGAGGCAACTAATAAACAGTATCCAGCAACAATGCATGGAGCTTTTCTTAGTGGGATGCGAGAGGCTGCAAACATATTGAGAGTGGCTAATCGGCGATCTTTGCTTATTAGATTGATCACTTGTCTTATATTCTTGTACATTTTCATCTTTGCATTTGAACCCTCTTATTTGTTGAGTTACTTCAATTGTTTGGTATCGGATAACAAAATGATAGTTAAGACACTCTTAGGACTGCTCTGA 2010 49.6 MEPQDLSDNPTAAVSGESTPENQSSPPETTLEVRVSDSQLDETSEPPPKKRRRRKKQFPEMISSAAAKIMDDIIGMQINDSPALSKTHRRRRRIADLAKEVDVEALVAISVGFPVDSLTEEEIEANVVTAIGGAEQANYIVVRNHILARWRWSVSTWLTRDHAMESIRSEHRNSVNSAYSFLLEHGYINFGLAPAIREVQLKPNDSLKASVIIVGAGLAGLAAARQLIFLGFKVLILEGRSRPGGRVRTRKMKRMDGCGVIAAADLGGSVLTGINGNPLGVLARQLGFPLHKVRDICPLYLPDGRMVNSEIDSRVETSFNRLLDRVCKLRQAMMEEVKSADVSLGTALEAFRRVYKVAEDPQERMLLNWHLANLEYANASLMSDLSMAYWDQDDPYEMGGDHCFIPGGNERFEFRGDMVLCTVPLGVLKKGTIDFLPQLPQRKRDAIQRIGFGLLNKVAMLFPYDFWGGEIDTFGHLTEESTMRGEFFLFYSYSSVSGGPLLVALVAGEAAINFEMMSPVEAVRRVLDILKGIFNPKGIAVPDPIQVVCTRWGKDRFTYGSYSYVAIGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVANRRSLLIRLITCLIFLYIFIFAFEPSYLLSYFNCLVSDNKMIVKTLLGLL* 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16377477 16379930 + Vvi3g1004 Vvi3g1004 784679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1004 669 Pfam SWIRM domain 113 190 IPR007526 GO:0005515
Vvi3g1004 669 PANTHER FLAVIN MONOAMINE OXIDASE 41 412 - -
Vvi3g1004 669 PANTHER FLAVIN MONOAMINE OXIDASE 413 624 - -
Vvi3g1004 669 SUPERFAMILY Homeodomain-like 101 203 IPR009057 -
Vvi3g1004 669 Gene3D - 411 566 - -
Vvi3g1004 669 MobiDBLite consensus disorder prediction 1 42 - -
Vvi3g1004 669 SUPERFAMILY FAD/NAD(P)-binding domain 209 617 IPR036188 -
Vvi3g1004 669 SUPERFAMILY FAD-linked reductases, C-terminal domain 451 564 - -
Vvi3g1004 669 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 210 232 - -
Vvi3g1004 669 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 583 598 - -
Vvi3g1004 669 Gene3D - 567 629 IPR036188 -
Vvi3g1004 669 ProSiteProfiles SWIRM domain profile. 98 199 IPR007526 GO:0005515
Vvi3g1004 669 Gene3D - 205 410 IPR036188 -
Vvi3g1004 669 MobiDBLite consensus disorder prediction 1 59 - -
Vvi3g1004 669 Pfam Flavin containing amine oxidoreductase 218 411 IPR002937 GO:0016491
Vvi3g1004 669 Pfam Flavin containing amine oxidoreductase 413 616 IPR002937 GO:0016491
Vvi3g1004 669 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 1 41 412 - -
Vvi3g1004 669 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 1 413 624 - -
Vvi3g1004 669 Gene3D - 104 204 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1004 - - - vvi:100245322 1188.33
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1004 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004494 2 2 2 3 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 1 1 2 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14628 PF01593 Amino_oxidase 8.90E-56 CL0063 Vvi TR