Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1006 ATGGTGGTTGCCGGAGGTGGCAGTGAATTGGGGGAAATTGTGGAGAAGGGGAAGAGAGGGAGGAAGAAGAGGATTGTGGCCGCCGGTGAGGGAGGCGGCCAGAGGCCTCTGCAGATTGTGAATAGGAACGGCGAGGTTGTTGATCTCGAGGCTTTGGCGAGCGCAGAAGATCCGTATGGCGACGAATTGAAGAGGAGGACAGTTGGTTTGGATAGGGAGGAGGAGATTTTGGGGGTTTTGAGGGGTTTGGATGGGCAGTGGTGTAGCAGGAGAAAGAAGAGGAAGATTGTGGACGCCAGTGGATTCGGGGACGCGCTACCGATAGGTTGGAAGCTGTTGTTGGGGCTGAAGAGGAGAGAGGGCCGTGTTTCGGTTTACTGCCGCAGATACATAAGCCCCAGTGGAGAGCAATTTGTATCCTGCAAGGAAGCTGCTGCATATTTGCAGTCTTATTTTGGACTTGCTGATACAAACCAACCAATGGGTCAAAGAGATGACAATATTCAGCAGGTCAACAGGATCTCTTCTGAGAGTCTTGCAGGTTCTACCCATAAGGATGACGACTTAGGAGAAGATATTATTCCCATTTCAGTTTTACCTAGTTCATCTATATCTTACGAATATGAGAAGGAAGTTGCCTTACTGGGGATCGAAAACCTGGCTGAGGTTGAAGTACGAGACCTTTTTGAATGTCACAAATGCAACATGACTTTTGATGAAAAGGATACATATTTGCAGCATCTATTATCGTCTCATCAGAGGACCACTAGGAGGTATAGACTTGGTACATCCGTTGGGGATGGTGTAATCGTCAAAGATGGAAAATATGAATGCCAGTTCTGCCATAAGATATTTCAGGAAAGGCGACGATATAATGGTCACGTAGGAATCCATGTGAGGAACTATGTCAGAAATTTTGAAGACATGCCTGGTCGCCCAAGTGTTCAAAAGACTGTTGAATCTCCATCTAGAGATGAGTTGCCTTCAAGGACCTCTAAAATGGATGCTTTGATTGAAATTGCCCAGAGTTCTATTTTTGAAACTTCTGCTGCAGCACCTAGTGATGAGCCCAATGGTGTTTGCACTTTTGGTAATCCAGATGTGATTTCTACTCCAGAAGTTCCTACTGCTGATTCTGAACATGAACAGAACTTAGGTTTTTGTCTTGGAGAACCAGAAATGGAAGATAGTATAACTAATAGAACTCTGGATGAAGAGTTGGATCAGCAAGAGGGTGACTGTGTGATGGCGGATGAAAACACAGAGAAGATCAATGGTGATAGTGATGCTGCATGTATCAAGATGGATTGTTGCTTGGATACCACAACTACCTTATCCACTAATGACAAAAATGGTTGTTCTTCTGAAAGTTTTGATGGAAAATATGGTGTTTCATTCTCCAATAATGAGGTGGAAAAGTCCGGCTTTGAGCAGAGAAGCCCTGAAACCCATTTACTTACTCCATCATCTAATCAGACAGTTTTCGATGTTGAAAATAATATGAATGATATCTCAGAGCAATCCAAACCTGGTGGAGTGGAAGAATATGAGAATAGTGGGTTGACACGTGGTTATGGAAGCAGTGATATTGGACGAGATAATGATGTTGCAACAATGACTATGAGCCAGACTCCAGAAGATAATGTATACCAGAATAGGGTTTCTGATTCCTCAATGCCCCTGGTGCACCCATTGCATTCTTTTCCCACATATAATGCAATCTCAGATAAGCATTTCTCTGATAGTTCTGCTCAGTACTTGCTGCTTCCCTAG 1773 44.11 MVVAGGGSELGEIVEKGKRGRKKRIVAAGEGGGQRPLQIVNRNGEVVDLEALASAEDPYGDELKRRTVGLDREEEILGVLRGLDGQWCSRRKKRKIVDASGFGDALPIGWKLLLGLKRREGRVSVYCRRYISPSGEQFVSCKEAAAYLQSYFGLADTNQPMGQRDDNIQQVNRISSESLAGSTHKDDDLGEDIIPISVLPSSSISYEYEKEVALLGIENLAEVEVRDLFECHKCNMTFDEKDTYLQHLLSSHQRTTRRYRLGTSVGDGVIVKDGKYECQFCHKIFQERRRYNGHVGIHVRNYVRNFEDMPGRPSVQKTVESPSRDELPSRTSKMDALIEIAQSSIFETSAAAPSDEPNGVCTFGNPDVISTPEVPTADSEHEQNLGFCLGEPEMEDSITNRTLDEELDQQEGDCVMADENTEKINGDSDAACIKMDCCLDTTTTLSTNDKNGCSSESFDGKYGVSFSNNEVEKSGFEQRSPETHLLTPSSNQTVFDVENNMNDISEQSKPGGVEEYENSGLTRGYGSSDIGRDNDVATMTMSQTPEDNVYQNRVSDSSMPLVHPLHSFPTYNAISDKHFSDSSAQYLLLP* 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16433626 16441033 - Vvi3g1006 Vvi3g1006 784681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1006 590 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 96 171 IPR001739 GO:0003677
Vvi3g1006 590 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 14 579 IPR037472 -
Vvi3g1006 590 Gene3D Classic Zinc Finger 216 303 - -
Vvi3g1006 590 ProSiteProfiles Zinc finger C2H2 type domain profile. 276 303 IPR013087 -
Vvi3g1006 590 PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 14 579 - -
Vvi3g1006 590 MobiDBLite consensus disorder prediction 503 532 - -
Vvi3g1006 590 ProSitePatterns Zinc finger C2H2 type domain signature. 278 298 IPR013087 -
Vvi3g1006 590 ProSitePatterns Zinc finger C2H2 type domain signature. 231 252 IPR013087 -
Vvi3g1006 590 MobiDBLite consensus disorder prediction 311 330 - -
Vvi3g1006 590 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 257 IPR013087 -
Vvi3g1006 590 SUPERFAMILY DNA-binding domain 104 152 IPR016177 GO:0003677
Vvi3g1006 590 SMART c2h2final6 276 298 IPR013087 -
Vvi3g1006 590 SMART c2h2final6 229 252 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1006 - - - vvi:100260704 1129.01
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1006 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017292 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 5
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14629 None None None None Vvi TF