Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1009 ATGGCTGGAAAGCTTGTTATCTCTGTAGTGAAGTGGCTGTGCCATCACATATGGTTTTCTGATATAGCAGTGGCTTTGTCCATTGTATTCATCCTCAGTTGTATACTTAACAGACTCACCAACAAAGGTCCCATGTTATGGCCAGTGCTTGGAATCCTTCCTTCTTTGTTCTTCCATATGAACGACATCTATGACTGGGGAACAAGAGCTTTGATCAAAGCTGGGGGAACATTCCACTATAGAGGAATGTTCAAGAATTTCCCCAAAGGTAACTACTACAGAGAGAGGTTCCATGATTTGCTCGGAGGTGGCATTTTCAACGTGGACCATGAATCATGGAAAGAGCAAAGGCGAATTGCAAGCTCTGAGATGCATTCCACTCAGTTTGTGGCGTACTCCTTTCAAACCATTCAAGATTTAGTGAACCAGAAACTGTTGGAACTAACAGATAAGCTGGCCAAGTCCGGAGACTGCATTGATCTGCAAGAAGTGCTTCTACGTTTTACTTTTGATAACATTTGCACTGCAGCTTTTGGCATTGATCCAGGGTGCCTGGCCTTGGAATTACCTGAAGTTTCCTTTGCAAAAGCCTTTGAAGAGGCTACTGAATTAACCTTGTTCAGATTCATGGTGCCACCTTTTATATGGAAGTCCATGAAGTTCTTTGGAGTAGGAACCGAGAAGCGGCTCCAGGAGGCTGTTCGGGTTGTACATGATTTCGCCGAGAAGACGGTGGCAGACAGGAGGATTGAATTGAGCAAGACTGGAAATTTAAACAAGCAGACCGATCTTTTGTCAAGAATCATGGCCATTGGAGAGCATGAAGAAGGTAAAGACAACCATTTCTCCGATAAGTTTCTTAAGGATTTTTGCATAAGTTTCATCCTGGCAGGACGAGACACCAGCTCCGTGGCTCTGGCATGGTTCTTCTGGCTAATAAACAAAAACCCAGAAGTTGAGAACAAAATTCTAGGCGAGATCAATGAAGTTTTAGGTCACAGAGAGTCCAAAACAGCTCTCACCATGGAAGACCTAAAGAAGATGGTATATCTGCAAGCAGCCTTATCCGAAACCCTACGTCTCTACCCTTCAGTTCCAGTAGACTTCAAAGAGGTTGTAGAGGACGATGTGCTCCCAGATGGGACACGAGTGAAGAAGGGCTCTAGGGTTCTCTACTCAATCTTCTCCATGGCTCGAATGGAGTCCATATGGGGCAAAGACTGCATGGAATTCAAGCCAGAGAGGTGGATCAAAGATGGTCAGTTTGTGAGTGAAAATCAGTTCAAGTATCCTGTGTTTAATGCTGGTCCCAGGCTCTGCATAGGGAAAAAGTTTGCATTCACGCAGATGAAAATGGTGGCTGCTTCAATCCTGATGAGGTACACAGTTAAGGTAGTGGAAGGTCACAGTGTTGTTCCAAAAATGACAACTACACTCTACATGAGGAATGGCTTGTTGGTGACTCTTGAGCCTAGGCTGAGCCTTGTTATTAATTAG 1497 44.42 MAGKLVISVVKWLCHHIWFSDIAVALSIVFILSCILNRLTNKGPMLWPVLGILPSLFFHMNDIYDWGTRALIKAGGTFHYRGMFKNFPKGNYYRERFHDLLGGGIFNVDHESWKEQRRIASSEMHSTQFVAYSFQTIQDLVNQKLLELTDKLAKSGDCIDLQEVLLRFTFDNICTAAFGIDPGCLALELPEVSFAKAFEEATELTLFRFMVPPFIWKSMKFFGVGTEKRLQEAVRVVHDFAEKTVADRRIELSKTGNLNKQTDLLSRIMAIGEHEEGKDNHFSDKFLKDFCISFILAGRDTSSVALAWFFWLINKNPEVENKILGEINEVLGHRESKTALTMEDLKKMVYLQAALSETLRLYPSVPVDFKEVVEDDVLPDGTRVKKGSRVLYSIFSMARMESIWGKDCMEFKPERWIKDGQFVSENQFKYPVFNAGPRLCIGKKFAFTQMKMVAASILMRYTVKVVEGHSVVPKMTTTLYMRNGLLVTLEPRLSLVIN* 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16640516 16642082 - Vvi3g1009 Vvi3g1009 784684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1009 498 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Vvi3g1009 498 PANTHER CYTOCHROME P450, FAMILY 86, SUBFAMILY C, POLYPEPTIDE 1 11 493 - -
Vvi3g1009 498 PANTHER CYTOCHROME P450 11 493 - -
Vvi3g1009 498 PRINTS E-class P450 group I signature 286 303 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g1009 498 PRINTS E-class P450 group I signature 306 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g1009 498 PRINTS E-class P450 group I signature 352 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g1009 498 PRINTS E-class P450 group I signature 430 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g1009 498 PRINTS E-class P450 group I signature 440 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g1009 498 SUPERFAMILY Cytochrome P450 43 492 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g1009 498 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 433 442 IPR017972 GO:0005506|GO:0016705
Vvi3g1009 498 Pfam Cytochrome P450 85 478 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g1009 498 Gene3D Cytochrome P450 40 492 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g1009 498 PRINTS P450 superfamily signature 297 314 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g1009 498 PRINTS P450 superfamily signature 353 364 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g1009 498 PRINTS P450 superfamily signature 431 440 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g1009 498 PRINTS P450 superfamily signature 440 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1009 - - vvi:100260584 994.571