Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1012 ATGGATATTGATTCTTTATTTTATCTTGTACTTGAAATAATATATGCTGATTATTTTCTCATAATAAATTTTATTCATGACTACCTTACTTACTCTGTAGGCAATGAGGGCCGTGAATACGTCCTGAGGCGTATTCTCCATAGAGATGTTCGTTATGGAAGTGAAGTTCTGAAAGCACAAGAAGGATTCTTCAATAGCCTCATAAACATTGTTGTAAAGGTGATGGGTGATGTTTTCCCTGAACTGAAACAACATGAAGTGCACATCAGTTTATAA 276 34.42 MDIDSLFYLVLEIIYADYFLIINFIHDYLTYSVGNEGREYVLRRILHRDVRYGSEVLKAQEGFFNSLINIVVKVMGDVFPELKQHEVHISL* 92
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16654191 16659203 + Vvi3g1012 Vvi3g1012 784687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1012 91 PANTHER ALANYL-TRNA SYNTHETASE 34 89 - -
Vvi3g1012 91 PANTHER ALANINE--TRNA LIGASE, CYTOPLASMIC 34 89 - -
Vvi3g1012 91 Pfam tRNA synthetases class II (A) 33 89 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Vvi3g1012 91 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 33 87 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1012 K01872 AARS, alaS; alanyl-tRNA synthetase [EC:6.1.1.7] - vvi:100249161 104.375
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1012 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018990 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 4